Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq65 109 5e-19 seq252 107 2e-18 seq442 104 2e-17 seq49 91.5 1e-13 seq187 89.7 5e-13 >seq65 Length=625306 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||| ||||| || ||||| ||||| || || ||| | Sbjct 412918 CCACCACGGAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 412977 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| ||||| || ||| | |||||||| |||||||||||||| Sbjct 412978 AGCGTGCGGCCGTCTTCCAGCTGTTTCCCCGCGAAAATCAATCGCTGCTGGTCCGGCGGG 413037 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || ||||| || | |||||| || || ||||| Sbjct 413038 ATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACC 413097 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || || || ||||| || || || |||||| Sbjct 413098 TCAAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATC 413145 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || ||||| | |||||||| || || || ||||| || || || || || Sbjct 275809 ATACCTCCACGAAGCCTGAGAACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCA 275750 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || ||||| ||| | || | || ||||||||||| Sbjct 275749 GCAAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 275690 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || |||||||| |||||||| |||| || | || | ||||| || ||| Sbjct 275689 GGGATTCCCTCTTTATCCTGAATTTTGGCCTTGA-CGTTATCGATTGTGTCAGAGCTCTC 275631 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| || || ||||| ||||| || || |||||||| Sbjct 275630 CACCTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATTTGCAT 275580 >seq252 Length=291119 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | || || || || ||||| || || || |||||| Sbjct 178858 ATACCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCG 178917 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| ||| | || | || ||||||||||| Sbjct 178918 GCCAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 178977 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || ||||| || | || | ||||||||| ||| Sbjct 178978 GGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGA-CGTTATCAATGGTGTCGGAGCTCTC 179036 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | ||| |||||||||| ||| || || ||||| ||||| Sbjct 179037 GACTTCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | || || || || |||||||| || || |||||| Sbjct 179086 ATACCACCACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCG 179145 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| ||| | || | || ||||| ||||| Sbjct 179146 GCCAATGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGA 179205 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || || || |||| || | ||||| || ||| Sbjct 179206 GGAATGCCTTCCTTATCCTGTATCTTGGCCTTGACATTATCGATTGTGTCAGAGCTCTCC 179265 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| ||| ||||| || || || || ||||| || ||||| Sbjct 179266 ACCTCGAGTGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 179315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || || || || ||||| || || || || ||| Sbjct 179314 ATACCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCG 179373 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || ||||| ||| | ||||| | |||||| ||||| Sbjct 179374 GCCAATGTTCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGA 179433 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| || ||| || | || | || | ||||| || ||| Sbjct 179434 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTCA-CGTTGTCAATCGTGTCCGAGCTCTC 179492 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||| |||||||| | ||||| || ||||| ||||| Sbjct 179493 CACCTCCAATGTGATCGTCTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 179543 >seq442 Length=166222 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| ||||| || || || ||||| ||||| || || || Sbjct 81103 ATACCACCACGGAGCCTGAGCACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 81044 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||| ||||| ||| | ||||| | ||||||||||| Sbjct 81043 GCAAGAGTCCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGA 80984 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || |||| || | || | ||||||||| ||| Sbjct 80983 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 80925 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || | ||| || || ||||| ||||| || || || ||||| ||| || Sbjct 80924 CACCTCGAGGGTGATCGTCTTTCCTGTTAGGGTTTTGACGAAGATCTGCATACCGCCAC 80866 >seq49 Length=794425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| |||||||| || |||||||| ||||| | ||| ||| || | || Sbjct 170720 TGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCAAGAGTTCGGCCATCTTCAAGCTGC 170779 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | || | | ||||||||||| ||||| ||||| || || ||||| ||| Sbjct 170780 TTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTT 170839 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||| || ||| ||||| || || | |||||||| || Sbjct 170840 GCCTTGACATTGTCGATAGTGTCCGAGCTCTCAACTTCTAGGGTGATGGTTTTGCCTGTA 170899 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| Sbjct 170900 AGGGTTTTAACAAAGATCTGCAT 170922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| |||||||||||||| ||||| | || ||| || | ||| Sbjct 170948 TGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCCAAAGTACGGCCATCCTCGAGCTGT 171007 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| | || || ||||| || || ||||||||||| ||||| || Sbjct 171008 TTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGGATTCCTTCTTTATCCTGAATCTTA 171067 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| || || ||| ||||| || || | |||||||| || Sbjct 171068 GCCTTGACATTGTCGATGGTATCCGAGCTCTCAACTTCTAGGGTGATGGTTTTGCCAGTG 171127 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||||||||| Sbjct 171128 AGGGTTTTAACAAAAATTTGCAT 171150 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||||| |||||||| || || || || ||||| | ||| | ||| || Sbjct 170257 CACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTGCAAGCGTTCGACCATCCTC 170316 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||||| || ||| |||| | || ||||||||||| || || ||||| || ||||| Sbjct 170317 TAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTG 170376 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| ||| |||| || | ||||| || || ||||| | || | ||||| Sbjct 170377 AATCTTTGCCTTGACATTGTCAATAGTGTCCGAGCTTTCAACTTCCAATGTTATGGTTTT 170436 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| || || || || ||||| Sbjct 170437 GCCTGTAAGAGTCTTGACGAAGATCTGCAT 170466 >seq187 Length=227058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || ||||| || ||||| ||||| || || ||| | Sbjct 169679 CCACCACGGAGACGGAGGACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 169738 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | |||||||| ||||||||||| || Sbjct 169739 AGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 169798 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || |||| || | ||||||||| |||||||| Sbjct 169799 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 169858 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || || ||||| || || || ||||| Sbjct 169859 TCAAGGGTGATTGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 169905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451964960529280