Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq69 125 9e-24 seq146 95.1 1e-14 seq522 87.8 2e-12 >seq69 Length=847923 Score = 125 bits (138), Expect = 9e-24 Identities = 395/599 (66%), Gaps = 15/599 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | || || |||||| || || |||||||| || || ||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||| ||||||||||| || || || ||||||||||| || || || || ||||| Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | |||||| || || | |||| | || | |||| ||||||||||||| Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGA---TCCGTCGATCCACGTCATCGCCCACTGC 356833 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTCTGA 127776 ||||| ||| ||| || |||| ||| | ||| || ||| || | | ||| | || Sbjct 356832 GCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTCCTTG 356773 Query 127777 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATT 127836 | | || |||||||| | || | ||| || | ||| |||| | || | Sbjct 356772 TTG-TCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCGAT 356714 Query 127837 ATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG-CA-AAA 127894 | ||| || ||||||||| ||||| || | || | |||||| || || Sbjct 356713 CGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGAA---CATCGGACATGAA 356657 Query 127895 TTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 127953 | | | || |||||| | ||| ||||| || || | || || || || |||| | Sbjct 356656 TCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTG 356597 Query 127954 CTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGA-GATCCTTTGAGA 128012 || ||||| | | | || ||||| || ||| ||||||| ||| |||| || | Sbjct 356596 TTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTCG-CGACCGTCCTGAGATA 356538 Query 128013 GATCTACCTCCTCCGCAGTCC-AATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAGAGG 128071 |||| || |||||||| |||| || | | || | |||||||| || | ||||||| Sbjct 356537 GATCGACTTCCTCCGCCGTCCAAAACGATGCTTCG-GCCTTCTTGTACATCTCCCAGATC 356479 Query 128072 TGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGTAGAAGCCAGGATTGGCTC 128130 || || || | | ||||||| ||||||| | |||| | || || | ||||| Sbjct 356478 TGTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGGGGTTGGAGTAAGAAGCGGCTC 356420 >seq146 Length=264749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/269 (69%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| | ||| || ||||| || || ||||| | ||| Sbjct 121004 GTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACC 121063 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||||| ||||||||||| || || || ||||||||||| || || || || Sbjct 121064 TCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCA 121123 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | ||| || || ||| | || | || | ||| |||||||| Sbjct 121124 AGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGA---TCCGTCGATCCATTTCATCGC 121180 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 127769 ||| | ||| ||||| ||| || || | ||| | ||| || ||||| | | ||| Sbjct 121181 CCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGAAGAGATGATCTCT 121240 Query 127770 -TTTCTGATGGATCTTTGATGTACTTATC 127797 | | || || ||||||||||| |||| Sbjct 121241 CTCTTTGTTG--TCTTTGATGTAGGTATC 121267 >seq522 Length=218374 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || ||||| || || ||||| | ||||| || | | Sbjct 161990 AACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCC--TC 161933 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | |||| | || || |||||||| || || |||||||| || | Sbjct 161932 CTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATGC 161873 Query 12910 ACGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 | || |||| | | || || || | ||| | ||||| ||||| ||||| Sbjct 161872 AAGG--AGCTTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACACC 161815 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 ||||| | ||||||||| | | || | ||| || ||| || || | ||| || Sbjct 161814 AACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTCC 161755 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | |||| ||| | ||||||||| ||||| || || Sbjct 161754 AGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613455297290880