Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq69 150 3e-31 >seq69 Length=847923 Score = 150 bits (166), Expect = 3e-31 Identities = 541/835 (65%), Gaps = 17/835 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| || || |||| | || ||| | ||||| | | || || || Sbjct 357301 CTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATCCAATCAAACGGATT 357242 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || |||| | || || || ||| | ||| || || |||||||| Sbjct 357241 CGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAAAAGCCTATCCGCAACAAATTC 357182 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||| || | |||| | || | ||| ||||||| || | ||| ||||| || | Sbjct 357181 GATATACTGGCTCATCAGGTCCCGGTTCATCCCCACCAACGCGCAGGGAAGCGCGTCGCA 357122 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||| |||| |||||||| || ||| || ||| | || || || | | Sbjct 357121 CACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGACTTCACGCGCTCCTCCGA 357062 Query 159889 CGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 |||| | || || || | | ||||||||| || |||||||||| || | Sbjct 357061 GAGCTTCGTCCTCAACAGAGTGT----AGATGAGGCACGCGAAATCGCAGTGCAAGCCTT 357006 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| |||||||| ||||||||||| | | | || |||||||||| ||| || || | Sbjct 357005 CGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTCTTCA 356946 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| ||||| | ||| |||| |||| || ||||| || || ||| || || || Sbjct 356945 GCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAGGCG 356887 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 |||| | ||| | ||| | | || | | | ||||| | | ||||| | ||| Sbjct 356886 ACGATACGCTCCGCGAAA---GTCTGGGATCCGTCGATCCACGTCATCGCCCACTGCGCC 356830 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACA 160186 ||||| |||| ||| || ||| |||| ||| ||||| ||| |||||| Sbjct 356829 TTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTCCTTGTTG 356770 Query 160187 TCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCC 160246 |||||||| ||| | | || |||||| || | || | || ||||| || Sbjct 356769 TCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCGATCGCG 356710 Query 160247 ATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTG 160305 ||||| || ||||||| ||||||| || || || || || |||| | Sbjct 356709 ATCTGGAACCCGTAGAAAGCACGCGCCTCC-GAGACTTGAACATCGGACATGAATCGAGA 356651 Query 160306 ACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGAT 160365 | | ||||| | ||| | ||||| | ||| || ||||| || | ||||| ||| Sbjct 356650 AGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGAT 356591 Query 160366 GAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGGGCCAAAT 160424 ||| || | |||| | | |||||| || ||||||| | | | |||| || | | || Sbjct 356590 GAAGTGCCGCTCGCCGTCGTTGAG---ATTCTCCCAGTCGCGAC-CGTCCTGAGATAGAT 356535 Query 160425 CAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | || || ||||| ||||| | || | || | |||||||| ||||||| Sbjct 356534 CGACTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTTGTACATCTCCCAGAT 356480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795087929870080