Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq522 134 2e-26 seq418 125 9e-24 seq69 122 1e-22 seq146 105 8e-18 seq559 84.2 3e-11 >seq522 Length=218374 Score = 134 bits (148), Expect = 2e-26 Identities = 200/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||| || ||||||| ||||| || || Sbjct 161991 AAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCCT-- 161934 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | |||| ||||||| || ||||||||||| ||||| || ||| Sbjct 161933 CCTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATG 161874 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || |||||| || |||| || ||||||| || | || ||||||| Sbjct 161873 CAAGGAGC--TTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACAC 161816 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 ||||||| | ||||||||| | || || | ||| || ||| || || | ||| | Sbjct 161815 CAACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTC 161756 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || | |||| ||| | || |||||||||||||| || Sbjct 161755 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 >seq418 Length=246988 Score = 125 bits (138), Expect = 9e-24 Identities = 283/417 (68%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | |||||| |||| | || ||| Sbjct 168287 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTT--CAA 168344 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | ||||| |||| ||| ||||| | ||||||||| || Sbjct 168345 ATCCATCCATCTCAGTGAGCAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---C 168401 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || ||||| || ||||| | ||||| |||| Sbjct 168402 CACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCCACAAAGACAATGC 168461 Query 16093 ATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || || || ||| ||| ||| ||||| || || | | || || ||||| Sbjct 168462 AAGGAGCGTTCTCTTTAGCTTTCTTGAAA-AGATCACGGACTCTCGATGCACCAACACCC 168520 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| Sbjct 168521 ACAAACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACC 168579 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 |||||||| || | |||||| || |||||||| || ||| |||||| |||| Sbjct 168580 AGCAATGGCCTTCGCCAAAAGAGTTTTCCCCGTACCAGGAGGACCAATGAGGAGAACACC 168639 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | || ||| | || ||| || | | ||||| || | ||| ||||| ||||| Sbjct 168640 TTTCGGGATCCTTGCACCAACCGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCCAC 168696 >seq69 Length=847923 Score = 122 bits (134), Expect = 1e-22 Identities = 375/572 (66%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | ||||||| | | || ||||| ||||||| | || |||||||| Sbjct 356445 ACAGATTCTGTATGTTCCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCG 356504 Query 101806 AA--ATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAA 101863 || || | |||||| || || || || ||||| || |||| ||| ||| | Sbjct 356505 AAGCATCGTT--TTGGACGGCGGAGGAAGTCGATCTATCTCAGGACGGTCGCGACTGGGA 356562 Query 101864 GACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTC 101923 || ||| || || || | | ||||| ||| || |||| || ||||| || | || Sbjct 356563 GAATCTCAACGACGGCGAGCGGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTC 356622 Query 101924 CGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT-GAGGTGCAATCCTCTG 101982 || ||||| ||| | |||||| || | | || || || || ||| ||| | Sbjct 356623 AGACGGAATCGTTCTGGAGAATCTCGCTT-CTCGATTCATGTCCGATGTTCAAGTCTCGG 356681 Query 101983 AAGCGAGATCTTTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATAC 102041 | ||| | ||||||| | || || | || || || | | ||| |||| ||| Sbjct 356682 AGGCGCGTGCTTTCTACGGGT-TCCAGATCGCGATCGAGAACATCCATTCCGAGATGTAC 356740 Query 102042 AGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCC 102101 ||| ||| | |||| || || ||||| |||| | || || ||| || Sbjct 356741 AGTCTCCTCCTCGACACTTACATCAAGGACAACAAGGAGAGAGACCATCTGTTTCGCGCA 356800 Query 102102 ATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA 102161 ||| |||| | || || | ||||| ||| | ||||| |||| |||| | || | Sbjct 356801 ATCGAAACCATCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCGATGACGTGGATCGACGGA 356860 Query 102162 AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 102221 || | | || || ||||| || |||| || || || || || || ||||||||| Sbjct 356861 ---TCCCAGACTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAAGGCATCTTCTTC 356917 Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || ||| ||||||| | |||| ||||| ||||| || || |||||||| || || | Sbjct 356918 TCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCGGGCTCATGCCGGGACTAACC 356977 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||| | |||||||| ||||| || Sbjct 356978 TTCTCCAACGAGTTGATCTCTCGAGACGAAGG 357009 >seq146 Length=264749 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| ||||| || || | || || || || || || |||||||||||||| ||| ||| Sbjct 121151 CTTCGCTGAACGTATCGTGGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTT 121092 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | |||| ||||| ||||| |||||| | ||||| || ||| ||||||||||| Sbjct 121091 CTGCTCGATTTTCTGGCTGAAGAAACGAGGTTTAATGCCTGGGCTCACTTTCTCCAACGA 121032 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || ||||| || || ||| Sbjct 121031 ATTGATCTCGCGAGACGAAGGCCTTCAC 121004 >seq559 Length=133630 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 102261 |||| || |||||||||||||| ||| ||||||| | |||| ||||| ||||| || Sbjct 23860 GTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCA 23919 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 102310 | |||||| | || | ||| ||||||||| | |||||||| ||||| Sbjct 23920 GACTCATGTCGGGACCGGCCTTTTCCAACGAGTTGATCTCTCGAGACGA 23968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620689885192960