Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq69 107 2e-18 seq12 91.5 2e-13 >seq69 Length=847923 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || |||||||| | ||| || |||| ||||| |||||||| || | |||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| || || | || || || || || ||||||||||| || || |||||||| Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 |||| | |||||| || |||| | || ||||| |||| | | ||||| | ||| Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGATCCGTCGATCCACGTCATCGCCCACTGCGCC 356830 Query 119694 TTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || | | | ||| |||| |||| ||| || Sbjct 356829 TTCTTCGCGACGCAAGGGATGGTTTCGATTGC 356798 >seq12 Length=830163 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051 ||||| | || ||||| || | ||||| ||||| | |||||| |||| || | || Sbjct 730433 TGAGGCCTTGGAGTTCCTGCGTACAAGAGAGTAGGGGGTGCATGAGTGAAGAGTCTCTGA 730492 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111 |||||| || ||| || | || ||||||| | ||| | ||| || |||| || Sbjct 730493 GACATCACGTGGTAAGTTTTGATTGCGGAGTCGATATCGTCCAAGTGGATGCCAACAGCG 730552 Query 111112 ACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAA 111171 || ||||| ||||| | ||||||| |||| | | || ||||| || | ||| | Sbjct 730553 ACACGCATCAACATGTGTTGAGGCCTTTCAACAACTTTCCCATCGACTTTCAAGAGGCAC 730612 Query 111172 CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 | |||| || || || | |||||||| || ||||||||||||| || Sbjct 730613 AACCTCTCAAGCGTTTTAAATCCAAAGTAATCATAATCGAAATCACGGTC 730662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588926172630400