Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq522 125 8e-24 seq109 111 2e-19 seq418 109 6e-19 seq146 93.3 5e-14 seq69 93.3 5e-14 >seq522 Length=218374 Score = 125 bits (138), Expect = 8e-24 Identities = 198/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 161991 AAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCCT-- 161934 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | |||| ||||||| || ||||||||||| ||||| ||||| Sbjct 161933 CCTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATG 161874 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCA--AAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || |||||| || ||| || ||||| | || || || ||||||| Sbjct 161873 CAAGGAGC--TTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACAC 161816 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 ||||||| | ||||||||| | || || | ||| || ||| || || | ||| | Sbjct 161815 CAACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTC 161756 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| ||| | || |||||||||||||| || Sbjct 161755 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 >seq109 Length=331296 Score = 111 bits (122), Expect = 2e-19 Identities = 296/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| ||||| | | || || || Sbjct 38362 CGGTCAAAACGTCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCCCTGTTGGTTGCA 38303 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || || || | | ||||||||||||||||| |||| || || || Sbjct 38302 GCAACTACGATAACGCCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTC 38243 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||| | ||||||||| || || | | || | | | |||| | || | Sbjct 38242 AGTGTCTGTTCTCTTTCATCATTACCTC-CAC-CGATTCCGGTTCCTCTTTGCCTACCAA 38185 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | ||||| || ||||||| || ||||| || || ||| || ||| ||| || | Sbjct 38184 CAGCATCTATTTCATCAACAAACACAATGCAAGGAGCATTCTCCTTGGCCTTTTTGAAAA 38125 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 | ||||| |||||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 38124 GGTCGCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AG 38066 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || | | |||||| ||| | |||||| ||||||||| || | || || || || Sbjct 38065 ATCGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGCGTTTTCCCA 38006 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608 ||||| || ||| | ||||| |||| || ||| || ||| || | | Sbjct 38005 GTACCGGGAGGACCAACAAGGAGAACACCTTTCGGGATCCGAGCACCAACCGCAGTGAAC 37946 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 37945 CTCTCAGGCTTCTTCAGAAACTCCAC 37920 >seq418 Length=246988 Score = 109 bits (120), Expect = 6e-19 Identities = 275/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | |||||| || | | ||||| Sbjct 168287 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTTCAAAT 168346 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || || |||| ||| ||||| | ||||||||| || | Sbjct 168347 CCATCCATCTCAGTGAGCAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---CCA 168403 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 168404 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCCACAAAGACAATGCAA 168463 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || || || || | | || ||||| || || || || || ||||| ||| Sbjct 168464 GGAGCGTTCTCTTTAGCTTTCTTGAAAAGATCACGGACTCTCGATGCACCAACACCCACA 168523 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | ||| | || | || ||| || ||| || |||||| || Sbjct 168524 AACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 168582 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 |||||| || | |||||| || |||||||| || ||| |||||| |||| Sbjct 168583 AATGGCCTTCGCCAAAAGAGTTTTCCCCGTACCAGGAGGACCAATGAGGAGAACACCTTT 168642 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 || ||| | || ||| || | | ||||| || | ||| ||||| ||||| Sbjct 168643 CGGGATCCTTGCACCAACCGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCCAC 168696 >seq146 Length=264749 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || ||||| || || | ||| || ||||| || || ||||| | ||| Sbjct 121004 GTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACC 121063 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||||| ||| |||| | |||||| ||||||||||||||||| || || || Sbjct 121064 TCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCA 121123 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | | || || |||||| |||| | ||| | ||||||||| || Sbjct 121124 AGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGA---TCCGTCGATCCATTTCATCGC 121180 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| |||| | ||| | | || || | |||| ||| || Sbjct 121181 CCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGC 121222 >seq69 Length=847923 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | || || |||||| ||| || |||||||| || || ||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||| ||| |||| | |||||| |||||||||||||| || || || || || || Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | ||||| ||||| | | || | ||| | ||| |||| ||||| | | Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGA---TCCGTCGATCCACGTCATCGCCCACTGC 356833 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||||||| | | || || | |||| ||| || Sbjct 356832 GCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGC 356798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589930887624320