Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq161 607 1e-168 seq352 298 7e-76 seq17 114 2e-20 seq842 87.8 2e-12 seq3237 82.4 9e-11 >seq161 Length=278270 Score = 607 bits (672), Expect = 1e-168 Identities = 738/1003 (74%), Gaps = 2/1003 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | ||||| || || | || ||||| Sbjct 90974 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 90915 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858 || ||| ||||||| || || | ||| | |||||| | || || |||| ||||| Sbjct 90914 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATT 90855 Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918 |||||||| || || || || ||||| || |||||||| || |||| || || | || Sbjct 90854 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTAC 90795 Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978 || ||||| || || || ||||| || ||||| | || || |||||| | || || Sbjct 90794 GGAAACAATATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTT 90735 Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038 || || ||||||||||| ||||| |||| || ||||| || ||||||||||||| || Sbjct 90734 TACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAA 90675 Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098 || | || | ||||| | |||| | | || ||||||||||| ||||||||| Sbjct 90674 CTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTT 90615 Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGC 180157 || || |||||||||| || ||||| ||| || |||||||| ||||| || || || Sbjct 90614 AGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGC 90556 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 || ||||||| ||| | |||| || | |||||||| || ||||| | ||||| Sbjct 90555 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 90496 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 || || || ||||| || ||||||| ||| |||| ||||| || ||||||||||| || Sbjct 90495 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 90436 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| || |||||| | || ||||| ||||| ||||||||||| || || || Sbjct 90435 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGC 90376 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||| ||||| |||| || ||| || || | |||||||| |||| ||| || Sbjct 90375 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGC 90316 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 || | ||||||| || |||||||||||||| || |||||||| || || || ||||| Sbjct 90315 TAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGG 90256 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 || || || || |||||||||| ||||| ||||||||||||||||| | || || Sbjct 90255 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTT 90196 Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577 |||| | || || ||||| || || || || ||||| ||||| | || | ||||| || Sbjct 90195 CTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTAT 90136 Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 ||| |||||||| || |||||||| |||||||| || | ||||| ||||||| ||||| Sbjct 90135 GGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGT 90076 Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697 | || |||||||| || | | ||||| ||| || ||||||||||||||||| || Sbjct 90075 TATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 90016 Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGAG 180740 |||||||||||||| ||||| || ||||| || |||| |||| Sbjct 90015 ACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGCTGTTGAG 89973 Score = 581 bits (644), Expect = 4e-161 Identities = 739/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | |||||||| || ||||| || |||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || ||| Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| || || |||||||| |||||| | || ||| ||||| | Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 122261 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 122262 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 122321 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || || ||||||||||| Sbjct 122322 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 122381 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || |||||||| || ||||| | || ||||||||| | | |||||||||||||| || Sbjct 122382 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGA 122441 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | ||||| || ||||| || || || || ||||| |||||||| || || Sbjct 122442 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 122500 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 ||||| || || || ||||| || || ||||| |||||||||||||||| ||||| || Sbjct 122501 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 122560 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 122561 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 122620 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| || || || | ||||| | || | || | || ||||| Sbjct 122621 CCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 122680 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| ||| || Sbjct 122681 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 122740 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 122741 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 122800 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| Sbjct 122801 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 122860 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | | || | | ||||| ||| | ||||| || Sbjct 122861 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 122920 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| ||||| || ||||| || Sbjct 122921 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 122980 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 ||| || || || ||||| || || |||||| | ||||| ||| | || | ||||| Sbjct 122981 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 123040 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 123041 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 123094 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 200065 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 200006 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 200005 CCTACTTGGGGAG 199993 >seq352 Length=147189 Score = 298 bits (330), Expect = 7e-76 Identities = 358/486 (74%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 180255 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTC 180314 ||||| || ||||||||||| || |||||||| || |||||| | || ||||| ||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 180315 TTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGT 180374 || ||||| || || || || ||||| ||||| |||| || | | || | | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 |||||||| |||| ||| || || | ||||||| || |||||||||||||| || Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494 |||||||| || ||||| ||||| || || || || ||||||||| || ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TTC 89096 Query 180495 AACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTC 180554 ||||| || ||||| | || |||||| | || || ||||| || || || || ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 180555 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 180614 ||||| | || | ||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 180615 ATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGT 180674 | ||||| ||||| |||| | || |||||||| || | | ||||| ||| Sbjct 88975 GTAGTTGATAGTCAA----GTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 180675 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 | ||||||||||||||||| || |||||||||||||||||||| || || || || ||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 180735 GCTGAG 180740 | |||| Sbjct 88859 GTTGAG 88854 >seq17 Length=826286 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || ||||| || || ||||| || | ||| || || || |||||||| ||| | || Sbjct 68765 CTCGACGCGGCGGAGGAAGCCGGAATCGATCTGCCTTACTCTTGCCGTGCTGGTTCTTGC 68824 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| ||| | ||| | || || ||||| || || |||||| Sbjct 68825 TCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 68884 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 ||||||||||| || | || |||||| ||||| || |||| ||||||||||| Sbjct 68885 GATGATGATCAGATCGGCGAAGGATTTGTTCTCACTTGTGCGGCTTATCCTAC 68937 >seq842 Length=174314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||||||| Sbjct 26615 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCAAAT 26674 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 26675 CCTACTTGGGGAG 26687 >seq3237 Length=30455 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 13163 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 13104 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 13103 CCTACTTGGGGAG 13091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610345160430720