Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq161 549 2e-151 seq352 271 9e-68 seq842 87.8 2e-12 >seq161 Length=278270 Score = 549 bits (608), Expect = 2e-151 Identities = 721/999 (72%), Gaps = 0/999 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| || Sbjct 90905 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 90846 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | |||||||| | || |||| | || |||||||| Sbjct 90845 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 90786 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || || |||||||| || |||| | || || || ||| | || || ||||| || Sbjct 90785 ATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 90726 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | ||||| ||| |||| || ||||||||||| | | | | Sbjct 90725 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 90666 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | ||||| || | || | || || |||||| | | |||||| | | | | Sbjct 90665 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGT 90606 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 90605 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 90546 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | |||||| ||||||| || ||| ||||||||||||||||||||||| Sbjct 90545 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 90486 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| || Sbjct 90485 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 90426 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||||||| Sbjct 90425 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGT 90366 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || | ||||| ||| | | || || || || || || | |||||| || | ||| Sbjct 90365 TCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 90306 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| |||||||||||||||||||| || || ||||| || || ||||| || || || Sbjct 90305 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGGC 90246 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 |||| |||||||| ||||| |||||||||||||| | | | || |||||| |||| Sbjct 90245 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCG 90186 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | || || ||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 90185 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 90126 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 | || || || || || ||||||||||| || ||| | | || | ||| ||| Sbjct 90125 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 90066 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| ||| Sbjct 90065 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 90006 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489 ||||| ||||| |||||| |||| ||| |||| || || Sbjct 90005 CACAATTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 89967 >seq352 Length=147189 Score = 271 bits (300), Expect = 9e-68 Identities = 358/495 (72%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 168996 TATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTA 169055 ||||||| || |||||||||||||||||||| || || || ||| ||| ||||| ||| Sbjct 89328 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 89269 Query 169056 TGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCA 169115 | || || || || ||||| || ||||||||||| | ||||| | | | | |||| Sbjct 89268 TATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCA 89209 Query 169116 GAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAA 169175 | || || || || | |||||| || | ||||||| ||||||||||||||||||| Sbjct 89208 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAA 89149 Query 169176 CCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTT 169235 | || || ||||| || || ||||| || || || |||| ||||||| ||| Sbjct 89148 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTT 89098 Query 169236 TCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGT 169295 ||||||| || | | | || |||||| |||| | | || || ||| || | |||| Sbjct 89097 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 89038 Query 169296 TAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAAT 169355 | || || | ||||| | || ||||| |||||| | || || || || || ||||||| Sbjct 89037 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 88978 Query 169356 CAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCA 169414 |||| || ||| || || || | ||| ||| |||| ||| | ||||| | || Sbjct 88977 CAGTAGTTGATAGTCAA--GT---GTTATTAATACTTGGGCTGATATTATTAACCGTGCT 88923 Query 169415 AACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCA 169474 ||| ||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 88922 AACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCT 88863 Query 169475 TCTGCTGAGACTACA 169489 ||| |||| || || Sbjct 88862 GCTGTTGAGGCTCCA 88848 >seq842 Length=174314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 169404 TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCAC 169463 ||||| | || ||| ||||||||||||| |||||||| ||||| |||||||||||||| | Sbjct 148248 TTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTC 148189 Query 169464 TAGACTTAGCATCTGCTGAGACTACA 169489 |||| |||| ||| |||| || || Sbjct 148188 TAGATCTAGCTGCTGTTGAGGCTCCA 148163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564393848240640