Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq161 508 7e-139 seq352 259 6e-64 seq7 100 3e-16 >seq161 Length=278270 Score = 508 bits (562), Expect = 7e-139 Identities = 714/1000 (71%), Gaps = 2/1000 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | ||||||||||| || ||| Sbjct 90905 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 90846 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 || || ||||| || || || | ||||| ||| | || ||| ||||| || || ||||| Sbjct 90845 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 90787 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 || || || ||||| || |||| | || || || ||| | || || ||||| || Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 90727 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 ||||||||| ||| |||| ||||||||| | ||||| |||||||||||| | | | | Sbjct 90726 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 90667 Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | ||||| | | ||| | | || ||||| | | |||||||| | | | Sbjct 90666 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCG 90607 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || ||| Sbjct 90606 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 90547 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 ||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 90546 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 90487 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||| ||||| |||||||||||| | || ||||| || ||||| |||||||| ||||| || Sbjct 90486 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 90427 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 || |||||| ||| ||||| || | || || || || |||| || ||||| || Sbjct 90426 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 90367 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 ||| || || || ||| | | || || || || || ||| ||||| || | || Sbjct 90366 TTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 90307 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 |||| ||||| |||||||||||||| |||||||| ||||| || || ||||| ||||| Sbjct 90306 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGG 90247 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || | |||||||| |||||| |||||||||||| | | | || |||||| |||| Sbjct 90246 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGC 90187 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || || || ||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 90186 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 90127 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 ||| || |||||||| |||||||||||||| || ||| | | || || || ||| Sbjct 90126 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 90067 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 90066 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 90007 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCA 172818 ||||| ||||| ||||||| ||| ||| ||| || || Sbjct 90006 TCACAATTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 89967 Score = 376 bits (416), Expect = 3e-99 Identities = 704/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||||| Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 122261 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 122262 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 122321 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || |||||| ||||| Sbjct 122322 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 122381 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || | | | |||||||| ||| | ||||| ||||| | || || Sbjct 122382 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGA 122441 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 122442 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 122501 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 |||| |||| || |||||||| || |||||||||| || ||| || ||| Sbjct 122502 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 122561 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 122562 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 122621 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 || ||||| |||||||| || || || |||| || | || | ||||| || |||||| Sbjct 122622 CCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 122681 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| ||| Sbjct 122682 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 122723 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 122724 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 122780 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || |||||||| || ||||| | || ||||| || ||| | | ||| Sbjct 122781 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 122840 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 122841 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 122900 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || | ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 122901 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 122960 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 |||||||| || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 122961 GATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 123020 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 123021 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 123080 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 123081 CGTGGAAACGCTCTTTAA 123098 >seq352 Length=147189 Score = 259 bits (286), Expect = 6e-64 Identities = 352/492 (72%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 172327 TTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATG 172386 ||||| || ||||| |||||||| ||||| || || |||||| ||| ||||| || | Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 172387 TTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGA 172446 ||||| || || |||| || ||||| ||||| || || || | | | | ||||| Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 172447 GAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACA 172506 || || || ||| ||||| || | || |||| ||||| |||||||||||||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 172507 TACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 172566 |||||||| ||||| || || ||||| ||||| || | ||||||| |||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 172567 AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTA 172626 ||||| || | | | || |||||| |||| | || || || ||| || | ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 172627 ACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCA 172686 || || | ||||| | || ||||| |||||||| || |||||||| |||||||||||| Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 172687 GTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAAC 172746 || || ||| | | | || || ||| |||| ||| || ||||| | || ||| Sbjct 88975 GTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 172747 CTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 | ||||||||||||||||||||| | ||||| ||||||||||| |||| || ||| || Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 172807 GCAGAGTCTTCA 172818 | ||| || || Sbjct 88859 GTTGAGGCTCCA 88848 >seq7 Length=1063282 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| ||||||||| |||||||| || ||||||||||| |||||||| | Sbjct 449379 GAGAATCCGGCTTGGTACACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGCCGT 449438 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| || | |||||| ||| ||| | ||||| || ||||| ||||| || || | Sbjct 449439 CTCGAATCTCTGCTCAATTTCCAGACGATGATCACCGATCTCACGGGACTTCCCATGTCT 449498 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||||||| || | || |||| || || || || || || ||| Sbjct 449499 AACGCATCGCTGCTGGACGAAGGGACCGCGGCTGCGGAGGCTATG 449543 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/111 (77%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 451863 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 451922 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAAAACATCTCACACCATTT 159801 || ||||| | ||||| |||||||| ||| ||||| | |||| ||| Sbjct 451923 TGGGCCTGGAATGGGTCCCATTGGTGTGAAGC--AACATTTAGCACCTTTT 451971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588001450868480