Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq161 578 4e-160 seq352 289 3e-73 seq2526 86.0 7e-12 >seq161 Length=278270 Score = 578 bits (640), Expect = 4e-160 Identities = 707/962 (73%), Gaps = 2/962 (0%) Strand=Plus/Minus Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471 ||||| || || | || ||||| || || ||||||| || || | ||| | ||||| Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 90879 Query 162472 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 162531 | ||| || |||| ||| | |||||||| || || || || || || || |||||| Sbjct 90878 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 90819 Query 162532 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 162591 || || |||| || || | || || ||||| || || || ||||| || |||| | Sbjct 90818 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACC 90759 Query 162592 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 162651 || || |||||| | || || || || ||||||||||| ||||| ||||||| ||| Sbjct 90758 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 90699 Query 162652 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCC 162711 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 90698 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 90639 Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GT 162770 || ||||| |||||||||||||| || |||||| ||||||||||| ||||| ||| || Sbjct 90638 TATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 90580 Query 162771 AGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCA 162830 ||||| || || ||||||||||| || | || || ||| || |||| || | ||||| Sbjct 90579 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 90520 Query 162831 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGT 162890 ||| ||| ||||| | ||||| | || ||| |||||| ||||||| ||| |||| Sbjct 90519 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 90460 Query 162891 CTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGT 162950 ||||| || |||||||||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 90459 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 90400 Query 162951 CTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 163010 ||||| ||||| || || ||||| ||||| ||||| ||||| || ||| | | | Sbjct 90399 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 90340 Query 163011 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 163070 || || || |||| ||| || || | ||||||| ||||||||||||||||| || Sbjct 90339 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 90280 Query 163071 ATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163130 |||||||| || || || |||||||| || || || ||||||||||||||||| || Sbjct 90279 TTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 90220 Query 163131 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 163190 ||||||||||||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 90219 CAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 90160 Query 163191 CACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 163250 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 90159 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 90100 Query 163251 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 163310 | ||||| |||| || ||||| | || || ||||| || || | |||||||| Sbjct 90099 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 90040 Query 163311 TTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGC 163370 | ||||||||||||||||| || || ||||||||||| ||||| || ||||| || || Sbjct 90039 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGC 89980 Query 163371 TG 163372 || Sbjct 89979 TG 89978 Score = 502 bits (556), Expect = 3e-137 Identities = 729/1022 (71%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 122261 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 122262 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 122320 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || ||| |||||| Sbjct 122321 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGT 122380 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || |||||||| || || || | || ||||| ||| | || |||||||||||||| || Sbjct 122381 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCG 122440 Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| |||||||| || | Sbjct 122441 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 122499 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || |||||| || || || || || |||||||| |||||||||| || || ||||| Sbjct 122500 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 122559 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || || || || || ||||| || | || | ||||| |||||||| ||||| |||| Sbjct 122560 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 122619 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || |||||||||||||| || || |||| |||| || |||||| ||||||| Sbjct 122620 ACCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTC 122679 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 122680 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 122739 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 122740 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 122799 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 122800 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 122859 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | | || || ||| | || || | Sbjct 122860 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 122919 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || || || || | ||||| |||||||| || || ||||||| Sbjct 122920 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTT 122979 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 ||||||| || || || | || |||||||| | ||||| ||| | || | || | Sbjct 122980 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 123039 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 123040 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 123097 Query 164637 AT 164638 || Sbjct 123098 AT 123099 >seq352 Length=147189 Score = 289 bits (320), Expect = 3e-73 Identities = 352/481 (73%), Gaps = 13/481 (3%) Strand=Plus/Minus Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||||| || |||||||||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 163011 || || || || || || ||||| ||||| ||||| ||||| || | | | || | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 163012 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACA 163071 || || || |||| ||| || || | ||||||| ||||||||||||||||| || Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 163072 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163131 |||||||| || || || |||||||| || || || |||||||||| ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 163132 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 163191 ||||| || ||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 163192 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 163251 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 163252 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGT 163311 | ||||| |||| |||| | || || ||||| || || | |||||||| Sbjct 88975 GTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 163312 TTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCT 163371 || ||||||||||||||||| || || ||||||||||||||||| || || || || ||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 163372 G 163372 | Sbjct 88859 G 88859 >seq2526 Length=25980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||||| || |||||||||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCAC 162981 || || || || || || ||||| |||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||||| || |||||||||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCAC 162981 || || || || || || ||||| |||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557536828393600