Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq161 509 2e-139 seq352 271 1e-67 seq2526 100 4e-16 >seq161 Length=278270 Score = 509 bits (564), Expect = 2e-139 Identities = 698/974 (72%), Gaps = 6/974 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 90944 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 90885 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || || | | |||| ||||||| ||||| ||||| || ||||| || || Sbjct 90884 GCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 90828 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | || || ||| |||| ||| | | || || ||||| || || || ||||| || Sbjct 90827 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 90768 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| || || || || || || || ||||| ||||||||||| ||| | ||| Sbjct 90767 ATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTT 90708 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||||| ||||| ||||| |||| |||| || | | ||||| | ||||| Sbjct 90707 GATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 90648 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | | ||||||||| || | | | |||||| | |||||| Sbjct 90647 GTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 90588 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || |||||| || || || ||||| | ||||| ||| || ||| | | || ||| Sbjct 90587 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCA 90528 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | ||||| || ||| ||||||| |||||| || ||||||||||| || ||||||| Sbjct 90527 ATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 90468 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 90467 ATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTA 90408 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 |||||||| ||||| ||||| | || ||| ||||| ||||| | || || ||| | Sbjct 90407 GCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 90348 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | || || || || || || | |||||| || | ||||||| ||||| ||||| Sbjct 90347 TTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAA 90288 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||| ||||| || || ||||| ||||| || | ||||||||||| Sbjct 90287 GAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 90228 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || |||||||||||| | | | || |||||| | || || | || || | || Sbjct 90227 GCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGT 90168 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 || ||| ||||| | ||| | |||||||| |||||||| || |||||||| ||| Sbjct 90167 ATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 90108 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || || |||||| ||||||||| || || ||||| Sbjct 90107 AACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAAC 90048 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || |||||||||||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 90047 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGAC 89988 Query 216272 TTGGCTGCTGCTGA 216285 | ||||||| ||| Sbjct 89987 CTAGCTGCTGTTGA 89974 >seq352 Length=147189 Score = 271 bits (300), Expect = 1e-67 Identities = 352/487 (72%), Gaps = 17/487 (3%) Strand=Plus/Minus Query 215801 TTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTC 215860 ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGA 215920 || || || || | || ||| ||||| ||||| | || || | | | | ||||| Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 215921 GAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACA 215980 || || || || | |||||| || | ||||||| ||||| ||||| || ||||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 215981 TACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTC 216040 |||||||| |||||||| || ||||| ||||| || | ||||||| |||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 216041 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCA 216100 ||||| || | | | || |||||| | || || | || || | |||| ||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 216101 ACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCT 216160 ||||| | ||| | |||||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 216161 GTCGTAGACGCATCTGGTAAA--GTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAG 216218 || || || | || || |||||| ||||||||| || || ||||| | || Sbjct 88975 GTAGTTGA------TAGTCAAGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 216219 GACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTG 216278 ||||||||||||| ||||| || ||||| |||||||||||||| |||| | |||| Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTG 88862 Query 216279 CTGCTGA 216285 ||| ||| Sbjct 88861 CTGTTGA 88855 >seq2526 Length=25980 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 215801 TTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTC 215860 ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 || || || || | || ||| |||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 215801 TTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTC 215860 ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 || || || || | || ||| |||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745018566096640