Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq49 114 8e-21 seq70 102 5e-17 seq69 100 2e-16 seq65 98.7 6e-16 seq252 95.1 8e-15 seq986 91.5 1e-13 seq187 86.0 4e-12 seq73 84.2 1e-11 >seq49 Length=794425 Score = 114 bits (126), Expect = 8e-21 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||||||| | ||||||||| | || ||||||||| || || || || | | Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| || ||||| || || || || || || | |||||||| | || Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | ||| |||||||| |||||| ||||| || | ||||| | ||| || ||| Sbjct 170816 ATCCCTTCCTTGTCCTGAATCTTTGCCTTGAC--AT--TGTCGATAGTGTCCGAGCTCTC 170871 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| |||||||| || || || || || ||||||||||||||| Sbjct 170872 AACTTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCATA 170923 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| |||||||||||||| || |||| || | || |||| || Sbjct 169801 AACAAGGTGAAGTGTCGACTCTTTCTGAATGTTGTAATCCGCTAGAGTCCGACCATCTTC 169860 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||||||||| | |||||||| | || | ||| |||||||| Sbjct 169861 AAGCTGCTTCCCGGCAAATATTAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCCTG 169920 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||||| | |||| ||| | ||| || || | || ||||| || Sbjct 169921 GATCTTGGCCTTGACATTGTCAATCGTATCAGAGCTCTCGACCTCAAGAGTGATGGTCTT 169980 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| | |||||| ||||| |||||||| Sbjct 169981 TCCCGTCAAAGTCTTGACAAATATCTGCAT 170010 Score = 105 bits (116), Expect = 4e-18 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| || || | ||| |||| |||| || |||||||| || || || Sbjct 170275 TTCTTTCTGTATGTTGTAATCTGCAAGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAA 170334 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||| |||| |||||||| | || | ||| |||||||| |||||| ||||| | Sbjct 170335 TATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATCTTTGCCTTGAC--A 170392 Query 34910 TGCTATCGAT--TCACCGGCCT--CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | || || | ||| || |||| || | ||||||||||| || || ||||||| Sbjct 170393 T--TGTCAATAGTGTCCGAGCTTTCAACTTCCAATGTTATGGTTTTGCCTGTAAGAGTCT 170450 Query 34966 TCACAAAGATCTGCATA 34982 | || |||||||||||| Sbjct 170451 TGACGAAGATCTGCATA 170467 Score = 102 bits (112), Expect = 5e-17 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||||||| | ||||||||| | || |||||||| || || || || | Sbjct 170468 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCAGCG 170527 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || |||||||| || || || || |||| || ||||| | || Sbjct 170528 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 170587 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCA--CCG-GC-CTC 34930 | ||| |||||||| |||||| ||| || || | |||||| | | || ||| Sbjct 170588 ATCCCTTCCTTGTCTTGAATCTTAGCTTTAAC--AT--TGTCGATTGTGTCTGAGCTCTC 170643 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| |||||||| || ||||| || || || |||||||||||| Sbjct 170644 AACTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCATA 170695 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||||||| | ||||||||||| || ||||| || || || || || | Sbjct 171152 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATCAGCC 171211 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| || |||||||| |||||||| || || | |||||||| | || Sbjct 171212 AGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 171271 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | || || || || ||||| ||||| | | ||||| | ||| || || Sbjct 171272 ATTCCTTCTTTATCCTGGATCTTGGCCTTGAC----GTTGTCGATGGTGTCCGAGCTTTC 171327 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| |||||| || || || || |||||||| |||||||||||||| Sbjct 171328 TACCTCGAGGGTTATCGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | ||| | || |||| || |||||||| ||||| || Sbjct 170048 TCCTTCTGTATGTTGTAATCAGCAAGAGTGCGACCATCCTCTAGCTGTTTGCCGGCGAAG 170107 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || || || | || | || |||||||| ||||||| ||| || || Sbjct 170108 ATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTCGCTTTAAC--AT 170165 Query 34911 GCTATCGATTCA--CCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | |||||| | | || ||| || || | ||||||||||| || || || ||||| Sbjct 170166 --TGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTTATGGTTTTACCGGTAAGGGTCTT 170223 Query 34967 CACAAAGATCTGCATA 34982 ||||| ||||||||| Sbjct 170224 GACAAATATCTGCATA 170239 >seq70 Length=414679 Score = 102 bits (112), Expect = 5e-17 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| | | ||||||||||| || || ||||| ||||| ||||||| Sbjct 19319 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 19378 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | | | || |||||||| || ||||| || || || || ||||| || |||| Sbjct 19379 GAGAGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGCGG 19438 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | ||| |||||||| |||||| || || || | ||||| | ||| | | Sbjct 19439 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCAC--AT--TGTCGATCGTATCCGACGATT 19494 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || | |||||| || || ||||| || || ||||| ||||||||||| || Sbjct 19495 CAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 19549 >seq69 Length=847923 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||| | ||||| |||| || ||| ||||| ||||| ||||| | Sbjct 38661 CCTCCTCTAAGCCTAAGGACCAAATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 38602 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| ||||| ||||||||||| || || || || ||||| || |||| Sbjct 38601 AGTGTCCGACCATCTTCCAGTTGTTTTCCGGCGAAGATCAGCCGCTGCTGATCCGGCGGG 38542 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | || |||||||| ||||| ||| || || | ||||| | ||| | || Sbjct 38541 ATGCCTTCCTTGTCCTGGATCTTAGCTTTCAC--AT--TGTCGATCGTGTCCGATGATTC 38486 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| |||| ||||| || || |||| ||||||||||| || |||||||| Sbjct 38485 AACCTCGAGTGTTATTGTCTTCCCCGCAAGAGTCTTCACGAAAATCTGCAT 38435 >seq65 Length=625306 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||||||||| || |||| | | | || |||| || Sbjct 276245 AACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCCTC 276186 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || || |||||||| | || | ||||| || || Sbjct 276185 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTG 276126 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| || || | ||||||| ||| | ||| || |||| ||| || | Sbjct 276125 AATCTTGGCCTTCAC----GTTATCGATTGTGTCAGAGCTCTCCACCTCGAGGGTAATCG 276070 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || ||||| |||||||| ||||| |||||| Sbjct 276069 TCTTGCCAGTGAGTGTCTTCACGAAGATTTGCATA 276035 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || ||||||||||| || || || Sbjct 412954 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCCGCGAAA 413013 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| |||| | || |||||||| |||||| |||||| || Sbjct 413014 ATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGAC--AT 413071 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || || || || | ||||||||| || ||||| || || || Sbjct 413072 --TGTCGATGGTGTCAGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTAAGGGTTTT 413129 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 413130 CACGAAGATCTGCATCTT 413147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | ||| ||||| | || || ||||| |||||||| || Sbjct 275770 TCCTTCTGAATGTTGTAGTCAGCAAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 275711 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||| || || ||| || ||||| Sbjct 275710 ATGAGACGCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTGAATTTTGGCCTTGAC---- 275655 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| ||| | ||| || |||| ||| || || |||||||| || || || Sbjct 275654 GTTATCGATTGTGTCAGAGCTCTCCACCTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTT 275595 Query 34967 CACAAAGATCTGCATA 34982 || || || |||||| Sbjct 275594 GACGAATATTTGCATA 275579 >seq252 Length=291119 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| ||||| | || || || || || ||||| || Sbjct 179809 TCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCGTCCTCGAGTTGCTTCCCGGCGAAG 179868 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||||| | || | |||||||||||| || || |||||| Sbjct 179869 ATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTG 179928 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || |||| ||| || || |||||||| || || || || Sbjct 179929 TCGATGGTGTCAGAACTCTCCACCTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGACG 179988 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 179989 AAGATCTGCATA 180000 >seq986 Length=79754 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || ||| ||| | || |||| || |||||||| || || | Sbjct 27373 TTCCTTCTGAATGTTGTAATCCTCAAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGTA 27314 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| ||||||||| | || | ||| |||||||| |||||| ||||| Sbjct 27313 GATAAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATCTTGGTCTTGACATC 27254 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || || || | ||||||||| || || || ||||| || || Sbjct 27253 GTCAATGGTGTCTAAGCTTTCGACCTCAAGGGTTATGGTCTTGCCTGTAAGAGTGTTGAC 27194 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 27193 AAAGATCTGCATA 27181 >seq187 Length=227058 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| | ||| | ||| | || || Sbjct 169697 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCG 169756 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | ||| |||||||| | || | || |||||||| Sbjct 169757 AGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 169816 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| || | ||||| || || ||| || || | ||| || || Sbjct 169817 ATCTTCGCCTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGT 169872 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| || || ||||| ||||||||||| || Sbjct 169873 CTTCCCCGTCAGGGTTTTCACGAAGATCTGCATTTT 169908 >seq73 Length=838620 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||| || || | |||||| |||| |||| || |||||||| ||||| Sbjct 423077 ATCATGGTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTG 423018 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || |||| || ||||| |||| ||||| || || ||||||||||| || | |||||| Sbjct 423017 TAATCCGCCAGTGTTCGTCCATCCTCCAGTTGCTTCCCGGCAAATATCAGCCTTTGCTGA 422958 Query 34866 TCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | || || ||||| Sbjct 422957 TCTGGTGGTATACCTTCTTTGTC 422935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324606822597504