Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq161 639 2e-178 seq352 311 1e-79 seq652 82.4 9e-11 >seq161 Length=278270 Score = 639 bits (708), Expect = 2e-178 Identities = 725/972 (75%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| || || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 89995 GGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 90054 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 90055 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 90114 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || || Sbjct 90115 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 90174 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | |||||| |||||||| |||||| ||| Sbjct 90175 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATATTGG 90234 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || ||||| || |||||||| ||||||||| Sbjct 90235 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATGTTGTAAGTTTCTTCTTCTTGA 90294 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | || | | |||| Sbjct 90295 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 90354 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 90355 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCT 90414 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 90415 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 90474 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| || | || || Sbjct 90475 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 90534 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 90535 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 90594 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||||||||||||||| ||| | | |||||| Sbjct 90595 CGCATACCCAGACGGAAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGT 90654 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| ||||| || ||||||||||| || | | Sbjct 90655 AAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT 90714 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||||||||| ||||| |||| | |||| Sbjct 90715 GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAGGTAGGAATAATGGCA 90774 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 90775 CCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 90834 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884 ||||| ||||| || ||| ||| |||||| || || ||| | ||| || | | || Sbjct 90835 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 90894 Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944 || || ||||| | | |||||||| |||| || | |||||| | |||| ||| | | Sbjct 90895 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATC 90954 Query 84945 CAATCACAGAAG 84956 || | ||||||| Sbjct 90955 CAGTTACAGAAG 90966 >seq352 Length=147189 Score = 311 bits (344), Expect = 1e-79 Identities = 355/476 (75%), Gaps = 13/476 (3%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | |||||||| || || |||||||| ||||| ||||||||||||| Sbjct 88864 GCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 88923 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 ||||| |||| | ||| ||||| ||||| | ||||| ||| ||||| || | Sbjct 88924 GCACGGTTAATAATATCAGCCCAAGTATTAATAACAC----TTGACTATCAACTACTGAT 88979 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| || || || ||||| ||||||| ||| | ||||| |||| Sbjct 88980 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAAC 89039 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || || |||||||| || ||||| || || | ||||||| ||||||||| Sbjct 89040 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA- 89098 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 || ||||||| | || || || || || |||||||| ||||| || |||||| Sbjct 89099 -------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTT 89150 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || |||||||||||||| ||||||| | || || |||||||||| ||||| | | Sbjct 89151 TCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 89210 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | | |||| || | ||||||||||| ||| ||||| | || || |||||| Sbjct 89211 ATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCAAATACA 89270 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||| || || ||||||||||| || |||||||| ||||| || || |||||||| Sbjct 89271 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 89326 >seq652 Length=103233 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 84611 CCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATA 84670 ||||||||||||||| ||| | | |||||| | || || | |||| |||| ||| Sbjct 31867 CCATTCACGACCCATATAACAAGCTACACCAAGTAAAAAATGTAGAACAATTAGTTTATA 31926 Query 84671 AGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATG 84730 ||| ||||| || ||||| ||||| || | ||| |||||||| || || || ||||| Sbjct 31927 AGGACCACCGTTGTATAGTCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATG 31986 Query 84731 TAGACCAATA 84740 | ||||||| Sbjct 31987 CAAACCAATA 31996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571225270253440