Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq874 91.5 2e-13 >seq2 Length=2373158 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | |||||||| ||||||||| Sbjct 1333102 CCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACCA 1333161 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||| ||||||||| | || | || || ||||||| Sbjct 1333162 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGAA 1333221 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || ||||| || ||| ||| || | |||||| ||| | |||||||| ||| Sbjct 1333222 ACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATATT 1333281 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || |||||||| ||||| Sbjct 1333282 CCCTCGATGCTATCATCCTTCATA 1333305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| ||||| || | || |||||||||||| | |||||| || || | ||| | Sbjct 1333428 AGTTCCGGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 1333487 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || ||||| || | || || || || | ||| || || || | ||| || | ||| | Sbjct 1333488 GTAAGTTTCGATTGCGGACTCAATGTCTTCCTTG-TGGATGCCGACAGAAACCCTCATCA 1333546 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||| | ||| || | ||| || || |||||| | || | Sbjct 1333547 GCATGTGTTGAGGCCTTTCAACTACTTTTCCATGGACTTTTAAGAGGTATGATCTCTCAA 1333606 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||| || ||||| |||| ||| || ||| ||||| || ||| Sbjct 1333607 GAGTTTTGAACCCAAAGTAGTCATATTCGAAATCGCGATCATAGATGATT 1333656 >seq874 Length=86422 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | || | ||||||| ||| | || | | ||| || ||||||||| Sbjct 39455 CCTCCTTGGTCAACGTAACGAGCAGTATCGTTGAATACACGCAGCATCGGAACAATACCA 39514 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | || || || || || ||||| ||| | || | |||||| || ||| Sbjct 39515 TTCGACGTTCCGTTCGTGCCACGGATGTAACTCCCAGTTGCACGGATATTATGAACCGAA 39574 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||||| ||||||| ||| || || || || || Sbjct 39575 AGACCAATACCCCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGTGTTTCGTATATA 39634 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 39635 CCTTCAATGCTATCATCTTTCAT 39657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562061245595520