Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq636 181 9e-40 seq15 143 2e-28 seq114 141 7e-28 seq49 114 1e-19 seq59 96.9 3e-14 seq40 91.5 1e-12 >seq636 Length=102301 Score = 181 bits (200), Expect = 9e-40 Identities = 556/848 (66%), Gaps = 14/848 (2%) Strand=Plus/Plus Query 551743 CTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATC 551802 ||||||| | ||||||| ||| ||||| || ||||| |||||| |||||| Sbjct 60880 CTCTTCTCACCATCGAAGAAGGTATCTTTGAAGTGAAGTCTACTGCTGGAGACACTCATC 60939 Query 551803 TTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACG 551860 ||||||| || || ||||| || ||| |||| |||| | |||| |||| ||||| | Sbjct 60940 TTGGTGGTGAGGACTTTGACAACAGAATGGTTAATCAC--TTTGTTCAAGAGTTTAAGAG 60997 Query 551861 AAAAAACAAAGTTGATCT-ATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTT 551919 || ||||| ||| | | | | | | | ||||||| | | | ||||| |||| Sbjct 60998 GAAGAACAAGAAGGATATTAGCGGTAACC-CGAGAGCTCTTAGGAGGTTGAGAACGGCTT 61056 Query 551920 GCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCAT 551979 | || ||||| || || |||||||||| | |||||||||||||| | || || Sbjct 61057 GTGAGAGAGCAAAGCGGACTCTTTCATCCACCGCGCAAACCACTATTGAGATTGACTCTC 61116 Query 551980 TATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTT 552039 | ||||| ||||| || | | || | || || | | || | |||||| || || Sbjct 61117 TCTTTGAAGGAATCGACTTTTATTCTCCGATCACTCGCGCAAGATTTGAGGAGCTTAACA 61176 Query 552040 CTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGAGATTCAAAGATT 552098 |||||||||||||| || || || || | | |||| | | | ||| | || || Sbjct 61177 TGGATCTCTTTAGAAAGTGTATGGAGCCTGTTG-AGAAGTGTCTCCGTGATGCTAAAATG 61235 Query 552099 GATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATT 552158 || || || || ||||| |||| ||||||||||| ||||| | || |||||| || Sbjct 61236 GACAAGAGCACGGTTCATGATGTTGTTCTTGTTGGTGGTTCTACGCGTATCCCTAAAGTT 61295 Query 552159 CGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG--TGTTAATCCAG 552216 | | | || || |||||||||||| | | || ||| | |||| || | Sbjct 61296 CAGCAGCTTCTACAAGATTTCTTCAATGGTAAAGAGCT--CTGCAAGTCTATTAACCCCG 61353 Query 552217 ATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATG 552276 | ||||| || || || ||||| || |||| || || ||||| |||| || | | Sbjct 61354 ACGAGGCCGTGGCTTACGGTGCAGCGGTTCAGGCCGCGATTCTGACTGGTGAAGGGAACG 61413 Query 552277 AAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACA 552335 | || | ||| | || | |||| | ||||| || ||||| ||||| ||| | |||||| Sbjct 61414 AGAAGGTGCAAGACCTTCT-CTTGCTTGATGTCACACCTCTCTCTCTCGGTCTTGAAACA 61472 Query 552336 GTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCT 552395 | || || ||||||| | | | || | || || || || || || || || Sbjct 61473 GCAGGTGGAGTTATGACCACTTTGATACAGAGGAACACAACGATACCGACCAAGAAGGAA 61532 Query 552396 CGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGA 552455 | || || ||||| || || || |||||| | | |||| || ||| | | ||||| Sbjct 61533 CAGGTCTTCTCTACTTACTCTGACAATCAACCAGGTGTTTTGATCCAAGTGTACGAAGGT 61592 Query 552456 GAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCT 552515 || ||| | || ||||| || || | | || | || | | ||||| ||| Sbjct 61593 GAGAGAGCAAGAACCAAAGACAACAACCTTTTGGGAAAGTTCGAGCTCTCCGGTATCCCT 61652 Query 552516 CCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATT 552575 || ||||| ||||| || || || || || |||||| || ||||| || || || Sbjct 61653 CCGGCTCCACGTGGCGTCCCTCAGATCACGGTCTGTTTCGACATTGATGCAAACGGTATC 61712 Query 552576 TTGAATGT 552583 | ||||| Sbjct 61713 CTCAATGT 61720 >seq15 Length=895683 Score = 143 bits (158), Expect = 2e-28 Identities = 538/835 (64%), Gaps = 14/835 (2%) Strand=Plus/Minus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 ||||| || ||||| || |||||| |||||| |||| || ||||| ||||| Sbjct 471815 GAAGAAGGCGTCTTTGAAGTGAAAGCTACAGCCGGAGATACTCACCTCGGTGGTGAAGAC 471756 Query 551817 TTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAA-ACGAA--AAAACAAAG 551871 ||||| || ||||| || | ||| | |||| || || || | ||| | || || | Sbjct 471755 TTTGACAACAGACTTGTGAACCAT--TTCGTTGCGGAGTTCAAGAGGAAGCATAAGAAGG 471698 Query 551872 TTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCA 551931 | ||| | || || | || ||| | | || ||||| ||||| || ||||| | Sbjct 471697 AT-ATCAGTGGGAAT--GCGAGGGCGCTTAGGAGGCTGAGAACAGCTTGTGAGAGAGCAA 471641 Query 551932 AACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAA 551991 | || | ||||| || |||| || ||||| || | ||||| || ||||| Sbjct 471640 AGAGAACGCTTTCTTCCACCGCTCAGACGACTATCGAGATCGATTCTTTGCACGAGGGTG 471581 Query 551992 TTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTA 552051 | |||| | || | || ||| | || | |||||||| || | ||||| || | Sbjct 471580 TCGATTTCTACGCGACCATCTCGCGTGCGAGGTTTGAAGAGATGAATATGGATCTGTTCA 471521 Query 552052 GAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAG 552111 | ||| || || || || || |||| | ||||| | |||||||| ||| || | Sbjct 471520 GGAAATGTATGGATCCTGTGGAGAAAGTCCTTAGAGACGCCAAGATTGACAAAAGCAGCG 471461 Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT-- 552169 | || || | || |||||||| || || || || ||||| ||||||| | | || Sbjct 471460 TGCACGAGGTGGTTCTTGTTGGGGGGTCGACGAGGATTCCGAAAATTCAGCAGCTCTTGC 471401 Query 552170 AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGC 552229 ||| | | ||||| || || | ||| |||| | || || || || |||||||| Sbjct 471400 AAGATTTC--TTCAACGGGAAGGAGTTATGCAAAAGCATAAACCCTGACGAAGCTGTTGC 471343 Query 552230 CTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAA 552289 |||||| || || |||| || || ||||| |||| || || || | || | Sbjct 471342 CTATGGAGCTGCGGTTCAGGCCGCGATTCTGACTGGTGAAGGAAGCGATAAGGTCCAGGA 471283 Query 552290 TATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTAT 552349 | || | ||| | || || | || ||| ||||| | ||||||| || || | || Sbjct 471282 TCTTCTGCTTCTTGACGTGGCGCCGCTAAGCCTTGGAATTGAAACAGCCGGTGGGGTGAT 471223 Query 552350 GACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTAC 552409 |||| | || || || || || | |||||||| || | || || || || Sbjct 471222 GACTGTGTTAATACCGAGGAACACGACGGTGCCTTGTAAGAAGGAGCAAGTGTTCTCCAC 471163 Query 552410 GTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCAC 552469 ||| | || || || | | ||| || ||| | | |||||||||| | | || Sbjct 471162 GTACGCGGACAACCAGCCAGGCGTTCTGATCCAAGTCTATGAAGGAGAACGTGCAAGGAC 471103 Query 552470 TAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGG 552529 ||||| || || | |||||||| ||| | | | || |||||||| || || ||||| Sbjct 471102 CAAAGACAACAACCTTCTTGGTACATTTGAGCTCAAGGGCATTCCTCCGGCGCCACGTGG 471043 Query 552530 AGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 ||| || || || | ||| || || || ||||| ||||| || || |||||| Sbjct 471042 AGTTCCTCAGGTTAATGTTTGCTTTGACATTGATGCGAATGGGATCTTAAATGTG 470988 >seq114 Length=758912 Score = 141 bits (156), Expect = 7e-28 Identities = 517/794 (65%), Gaps = 18/794 (2%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTG 551847 |||||| | ||||||||||| |||||||| || || ||| |||| | || | ||| Sbjct 381091 GGAGATACCCATCTTGGTGGTGAAGATTTCGACAACAGAATGGTTAACCA--CTTTGTGC 381034 Query 551848 AAGATTTTAAACGAAAAAACAAAGTTGAT-CTATCTACATCTGCCAAAGCTCTTCGTCGT 551906 |||| ||||| | || ||||| ||| || | | | | | ||||||| | | Sbjct 381033 AAGAGTTTAAGAGGAAGAACAAGAAGGATATTAGCGGTAAC-CCGAGAGCTCTTAGGAGG 380975 Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 | ||||| |||||||| ||||| || | ||||||| || |||| ||||| || Sbjct 380974 TTGAGAACAGCTTGCGAGAGAGCAAAGAGGACTCTTTCTTCCACCGCTCAGACCACCATC 380915 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | || || | ||||| |||||||||| || | || || | | || | ||| Sbjct 380914 GAGATTGACTCTCTGTTTGAAGGAATTGATTTCTATTCTCCAATCACCCGCGCTAGATTC 380855 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAG 552085 || || || |||||||| ||||| || || || || | | |||| | | | Sbjct 380854 GAGGAGCTTAACATGGATCTCTTCAGAAAGTGTATGGAGCCTGTCG-AGAAGTGTCTCCG 380796 Query 552086 AGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 ||| | ||||| || || || ||| ||||| |||| ||||| ||||| ||||| | Sbjct 380795 TGATGCCAAGATGGACAAGAGCACAGTGCATGATGTTGTCCTTGTCGGTGGTTCTACTCG 380736 Query 552146 AATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 || || || ||| || || | ||| ||| ||||| || || | | || | Sbjct 380735 TATCCCCAAGGTTCAGCAATTGCTCCAAG-ACTT-CTTCAACGGCAAGGAGCT--CTGCA 380680 Query 552204 AG--TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || | | || || ||||||||||| || |||||||| || |||| || || ||||| Sbjct 380679 AGTCTATCAACCCCGATGAGGCTGTGGCATATGGTGCAGCCGTTCAGGCTGCGATTCTAA 380620 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCT 552320 || || | || ||| | ||| | || | |||| | ||||| || ||||| || Sbjct 380619 GCGGTGAAGGAAACGAGAAAGTTCAAGACCTTCT-CTTGCTTGATGTCACGCCTCTCTCC 380561 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 |||||| | ||||| | ||| ||| | ||||| | | | ||| | ||||| || || || Sbjct 380560 CTTGGTCTTGAAACCGCTGGTGGTGTCATGACCACTTTGATCCAGAGAAACACGACGATC 380501 Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440 || || || | || || ||||| |||||||| || || | | ||| || Sbjct 380500 CCGACCAAGAAGGAACAGGTCTTCTCTACCTATTCAGACAACCAGCCAGGTGTGTTGATC 380441 Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500 ||| | | ||||| || ||| || || || || || | || |||| || | Sbjct 380440 CAAGTCTACGAAGGTGAGAGAGCCAGAACCAAGGACAACAACCTCCTCGGTAAATTCGAG 380381 Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATC 552560 || || || ||||| ||||| ||||| || || || || || ||||| || Sbjct 380380 CTATCTGGAATCCCTCCGGCTCCACGTGGTGTCCCACAGATCACGGTCTGCTTCGACATT 380321 Query 552561 GATGCCAATGGAAT 552574 ||||| ||||| || Sbjct 380320 GATGCGAATGGTAT 380307 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || ||||| || ||||||||||| || ||||||||| |||| Sbjct 384972 ACCGTTCCTGCTTACTTCAACGACTCTCAGCGTCAAGCTACAAAGGATGCTGGAGTTATT 384913 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | || ||| | ||||||||||| || || || || || || |||| || || Sbjct 384912 GCTGGTTTGAACGTTATGCGTATTATCAACGAGCCCACCGCAGCAGCTATTGCCTACGGT 384853 Query 550529 CTTGATAAA 550537 ||||| ||| Sbjct 384852 CTTGACAAA 384844 >seq49 Length=794425 Score = 114 bits (126), Expect = 1e-19 Identities = 154/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| |||||||| ||| ||||| |||||||||||||| | ||| | ||| || Sbjct 170944 CAAG-TGAAGGGTTGACTCCTTTTGG--ATATTGTAATCAGCCAAAGTACGGCCATCCTC 171000 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || ||||| |||||||| || || || || ||||| ||||| |||||||||||||| || Sbjct 171001 GAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGGATTCCTTCTTTATCCTG 171060 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTT 563444 ||| || || || || || ||||| | | | ||| || || | ||||| Sbjct 171061 AATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACTTCTAGGGTGATGGTTTT 171120 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| || |||||||| |||||||||||| Sbjct 171121 GCCAGTGAGGGTTTTAACAAAAATTTGCATA 171151 Score = 107 bits (118), Expect = 2e-17 Identities = 154/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| |||||||| ||| | ||||| |||||||||||||| ||||||| ||| || Sbjct 171172 CAAG-TGAAGGGTTGACTCTTTTTGG--ATATTGTAATCAGCCAGAGTTCGGCCATCCTC 171228 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || ||||| |||||||| || || || ||||| || ||||| |||||||||||||| || Sbjct 171229 GAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATTCCTTCTTTATCCTG 171288 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAACAGTTT 563443 || || || || || || || || | | | ||| ||||| || | || | Sbjct 171289 GATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTTTCTAC-CTCGAGGGTTATCGTCT 171347 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || |||||||| ||||| || || ||||| Sbjct 171348 TGCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 Score = 102 bits (112), Expect = 7e-16 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| || ||||| ||| | | ||| |||||||||||||| ||||| | |||||| Sbjct 170488 CAAG-TGCAGGGTTGACTCTTTCTGG--ATATTGTAATCAGCGAGAGTGCGGCCATCTTC 170544 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 ||| ||||| || || || || ||||| || || || ||||| || ||||| || ||||| Sbjct 170545 AAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTG 170604 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTT 563444 ||| || ||| || || ||||| || | | | ||| || || | ||||| Sbjct 170605 AATCTTAGCTTTAACATTGTCGATTGTGTCTGAGCTCTCAACTTCTAGGGTGATGGTTTT 170664 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| || ||||| ||||| || |||||| Sbjct 170665 GCCAGTGAGGGTTTTGACGAAGATCTGCATA 170695 Score = 98.7 bits (108), Expect = 8e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| || ||||| |||||| ||||||||||| || ||||||| |||||||| Sbjct 170716 CAAG-TGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCAAGAGTTCGGCCATCTTCAA 170774 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || || || || || ||||| || ||||| || |||||||| ||||| || || |||| Sbjct 170775 GCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAA 170834 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 | ||| || || || || || || | | | ||| || || | ||||| | Sbjct 170835 TCTTTGCCTTGACATTGTCGATAGTGTCCGAGCTCTCAACTTCTAGGGTGATGGTTTTGC 170894 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| |||||||| || || |||||| Sbjct 170895 CTGTAAGGGTTTTAACAAAGATCTGCATA 170923 Score = 96.9 bits (106), Expect = 3e-14 Identities = 160/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| | ||||| ||||| || ||| ||| ||| | ||||||||||| ||||| | Sbjct 170021 AGACGCAACACAAGGTGAAGCGTTGACTC-CTTCTGTA-TGTTGTAATCAGCAAGAGTGC 170078 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || || ||||| ||||| || || ||||| || ||||| ||||| ||||||| Sbjct 170079 GACCATCCTCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTT 170138 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTCG 563430 | || |||||||| || ||| || || ||||| || |||| | || ||| Sbjct 170139 CCTTGTCTTGAATCTTCGCTTTAACATTGTCGATTGT----GTCTGAGCTCTCCACTTCC 170194 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | |||||||| ||||| || || || || || |||||| Sbjct 170195 AATGTTATGGTTTTACCGGTAAGGGTCTTGACAAATATCTGCATA 170239 >seq59 Length=439719 Score = 96.9 bits (106), Expect = 3e-14 Identities = 510/800 (64%), Gaps = 16/800 (2%) Strand=Plus/Minus Query 551799 CATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTA 551856 ||||| ||||| || |||||||| || || |||| ||||| | ||| | || |||| Sbjct 253012 CATCTCGGTGGTGAGGATTTTGACAACAGGATGGTGAATCAT--TTCGTTCAGGAGTTTA 252955 Query 551857 AACGAAAAAACAAAGTTGATCTATCTAC-ATCTGCCAA-AGCTCTTCGTCGTCTAAGAAC 551914 | |||| |||| ||| | || | | |||| ||| | | | || || || Sbjct 252954 AGAGAAAGCACAAGAAGGATATCACTGGGAAC--CCAAGAGCCTTGAGGAGGCTGAGGAC 252897 Query 551915 TGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGA 551974 |||||||| || || || | | ||||| || |||| || || || || | || Sbjct 252896 AGCTTGCGAGAGGGCGAAGAGGACCCTTTCTTCGACCGCTCAGACGACAATAGAGATCGA 252837 Query 551975 TTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATAT 552034 || | | ||||| || |||| ||||| | || | | |||| ||| || || | Sbjct 252836 CTCCCTCTACGAGGGCATCGATTTCTATACGACCATCACTCGTGCCAGATTCGAGGAACT 252777 Query 552035 TTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGAGATTCAA 552093 ||||| || || || || || || || || |||| ||| |||||| | | Sbjct 252776 CAACATGGATCTTTTCAGGAAGTGTATGGAGCCCGTGGAG-AAGTGTTTGAGAGATGCTA 252718 Query 552094 AGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTA 552153 |||| || || | || ||||| |||| || |||||||| || |||||||| || | Sbjct 252717 AGATGGACAAGAGCGGTGTCCATGATGTTGTCCTCGTTGGTGGCTCCACAAGAATCCCCA 252658 Query 552154 AAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 || | | | | || ||| ||| || ||| || ||| | | | |||| |||| Sbjct 252657 AAGTGCAGCAGCTTTTGCAAGA-CTTCTT-CAACGGGAAAGAGCTCTGTAAAAGCATTAA 252600 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 || ||||| |||||||||||||| || || ||||||| || || | || || Sbjct 252599 CCCTGATGAAGCTGTTGCCTATGGAGCAGCTGTTCAAGCTGCGATCTTGAGCGGTGAAGG 252540 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | || || | ||| || | |||| | ||||| ||||| | || | ||||| || Sbjct 252539 GAACGAGAAGGTCCAAGATTTGTTACTCCTTGATGTCACTCCCTTGTCCTTGGGTTTGGA 252480 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 ||| | || ||| ||||||| || || || || || || ||||| || || Sbjct 252479 AACCGCCGGTGGTGTTATGACCGTCCTGATTCCGAGGAACACCACGATTCCGACCAAGAA 252420 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | |||| || || |||||||| || || | | ||| || ||| | | || Sbjct 252419 GGAGCAGATATTCTCGACCTATTCAGACAACCAGCCCGGTGTACTGATCCAAGTCTACGA 252360 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACT-TGGTACTTTTAATTTAGAAGGTA 552510 |||||| ||| | || || || || || | | || | || | |||| |||| Sbjct 252359 AGGAGAGAGAGCAAGAACAAAGGACAACAACCTTTTGGGGAAGTTCGAGCTTAG-CGGTA 252301 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | || ||||| || | || || ||||| || || |||||| ||||| ||||||| Sbjct 252300 TACCACCTGCACCAAGAGGTGTTCCGCAGATCACCGTGTGTTTCGACATCGACGCCAATG 252241 Query 552571 GAATTTTGAATGTGACTGCT 552590 |||| |||| ||| | ||| Sbjct 252240 GAATCCTGAACGTGTCGGCT 252221 >seq40 Length=501581 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 || |||| || | || || | ||||||||||| || || || ||||| || | || Sbjct 174857 AAAAAGTAACCAAGGCTGTCGTCACTGTACCAGCGTACTTCAACGACTCTCAGAGGACAG 174916 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||| ||||||||||| || |||||||| | | ||||||||||| |||||||| || | Sbjct 174917 CTACGAAAGATGCTGGTCGCATTGCTGGTTTGGAAGTTCTTCGTATAATCAATGAGCCCA 174976 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 | ||||| | | || ||||| |||| Sbjct 174977 CAGCTGCATCCTTGGCTTATGGGTTTGA 175004 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || || || || || || || || ||||| || | ||| | Sbjct 171020 AAGTAACCAAGGCTGTTATCACCGTGCCTGCTTACTTCAACGACTCTCAGAGAACAGCAA 171079 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || || ||||| | | |||||||||||||||||||| || |||| Sbjct 171080 CGAAAGATGCTGGTCGCATCGCTGGGTTGGAAGTTCTTCGTATTATCAATGAGCCCACTG 171139 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 ||||| | | || ||||| |||| Sbjct 171140 CTGCTTCTTTGGCTTATGGTTTTGA 171164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028938077636320