Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq161 580 3e-161 seq352 232 2e-56 seq842 95.1 4e-15 >seq161 Length=278270 Score = 580 bits (642), Expect = 3e-161 Identities = 726/996 (73%), Gaps = 0/996 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||| ||||| || ||||| |||||||||||||| Sbjct 89970 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTC 90029 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 90030 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 90089 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || |||||||||||| | || Sbjct 90090 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 90149 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 90150 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 90209 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 | || || || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 90210 GGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 90269 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 90270 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 90329 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | ||| | ||||| || | || ||||||||| |||| | Sbjct 90330 TGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 90389 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 90390 ACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 90449 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 90450 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 90509 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| || Sbjct 90510 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 90569 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | |||||| || | ||||||||||||||| || Sbjct 90570 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACG 90629 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| | | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 90630 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 90689 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 ||| |||| ||| || || | || ||||||||||||||| ||||| || || | ||| || Sbjct 90690 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 90749 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 || || | || | || || || || || || |||||||| || || | | ||| Sbjct 90750 AGCTGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 90809 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || | Sbjct 90810 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 90869 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 90870 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 90929 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || ||||| | || || || | ||||| ||| || Sbjct 90930 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 90965 >seq352 Length=147189 Score = 232 bits (256), Expect = 2e-56 Identities = 344/489 (70%), Gaps = 13/489 (3%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| ||||| || || ||||||||||| || ||||| |||||||||||||| Sbjct 88851 AGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 88910 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || |||| |||||||||| ||| ||||||||||| | || ||| | Sbjct 88911 CATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACTTGACT---- 88966 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || |||||||||||| | || Sbjct 88967 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 89026 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 89027 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 89086 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || | ||||||| | || ||||| || |||||||| || || Sbjct 89087 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 89137 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 89138 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 89197 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | || | |||| || | || ||||||||| |||| | Sbjct 89198 TGTGGTTTCCCTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 89257 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || || ||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 89258 GCCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 89317 Query 36440 TGCCTGAAA 36448 ||||| || Sbjct 89318 AGCCTGGAA 89326 >seq842 Length=174314 Score = 95.1 bits (104), Expect = 4e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| ||||| || || ||||||||||| || ||||| |||||||||||||| Sbjct 148166 AGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 148225 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAAT 36046 ||| || |||| |||||||||| ||| Sbjct 148226 CATACCAAAGTTAGCACGGTTAATAAT 148252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150442307979872