Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq161 576 4e-160 seq352 232 2e-56 seq842 91.5 4e-14 >seq161 Length=278270 Score = 576 bits (638), Expect = 4e-160 Identities = 727/999 (73%), Gaps = 0/999 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||| ||||| || ||||| ||||||||||| Sbjct 89967 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAAC 90026 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 90027 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 90086 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || |||||||||||| | Sbjct 90087 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 90146 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 90147 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 90206 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 |||| || || || |||||||| |||||||| | || ||||| || |||||||| || Sbjct 90207 ACGGGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGC 90266 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 90267 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 90326 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | ||| | ||||| || | || ||||||||| |||| Sbjct 90327 TTCTGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 90386 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 90387 GGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 90446 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 90447 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 90506 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| Sbjct 90507 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 90566 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||||| Sbjct 90567 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTC 90626 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| ||| | | || | | |||||| | ||||| |||| ||| || || Sbjct 90627 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 90686 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 |||||| || | ||| || || | || ||||||||||||||| ||||| || || | ||| Sbjct 90687 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 90746 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || ||||| || || |||||||| || || | | Sbjct 90747 AATAGCTGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 90806 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || Sbjct 90807 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 90866 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | ||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 90867 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 90926 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||||| ||| || Sbjct 90927 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 90965 >seq352 Length=147189 Score = 232 bits (256), Expect = 2e-56 Identities = 346/492 (70%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| || |||||||||||||| || ||||| ||||||||||| Sbjct 88848 TGGAGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 88907 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || |||| |||||||||| ||| ||||||||||| | || ||| | Sbjct 88908 TTCCATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACTTGACT- 88966 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || |||||||||||| | Sbjct 88967 ---ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 89023 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 89024 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 89083 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || | ||||||| | || ||||| || |||||||| || Sbjct 89084 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 89134 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 89135 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 89194 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | || | |||| || | || ||||||||| |||| Sbjct 89195 TTCTGTGGTTTCCCTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAG 89254 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || || ||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 89255 GGAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 89314 Query 25917 TTCTGCCTGAAA 25928 || ||||| || Sbjct 89315 CTCAGCCTGGAA 89326 >seq842 Length=174314 Score = 91.5 bits (100), Expect = 4e-14 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| || |||||||||||||| || ||||| ||||||||||| Sbjct 148163 TGGAGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 148222 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAAT 25526 |||||| || |||| |||||||||| ||| Sbjct 148223 TTCCATACCAAAGTTAGCACGGTTAATAAT 148252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151981384274368