Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq252 100 2e-16 seq49 100 2e-16 >seq252 Length=291119 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| |||||||| |||||||| | | | ||| Sbjct 179098 AGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCCAATGTGCGA 179157 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || || ||||| ||||||| |||| ||| ||| Sbjct 179158 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCC 179217 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | || || ||||||||| | ||| Sbjct 179218 TTATCCTGTATCTTGGCCTTGACATTATCGATTGTGTCAGAGCTCTCCACCTCGAGTGTA 179277 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | || || ||||| |||||||| Sbjct 179278 ATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 179315 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || ||||| ||||| || | | ||| Sbjct 179326 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCCAATGTTCTG 179385 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || |||| | || ||||||| |||| ||| ||| Sbjct 179386 CCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCC 179445 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || ||||||||||| || Sbjct 179446 TTGTCTTGGATCTTTGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCCACCTCCAATGTG 179505 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| ||||| || ||||||||||| Sbjct 179506 ATCGTCTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 179543 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || ||||| |||||||| | | | ||| Sbjct 178870 AGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGA 178929 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || || ||||| || |||| || | ||| ||| Sbjct 178930 CCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCC 178989 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | | || || ||| || || | || Sbjct 178990 TTGTCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACTTCAAGGGTG 179049 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| || || ||||||||||| Sbjct 179050 ATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 >seq49 Length=794425 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| |||||||| | |||| | ||| | || || | |||||| |||||||| Sbjct 169819 CTCTTTCTGAATGTTGTAATCCGCTAGAGTCCGACCATCTTCAAGCTGCTTCCCGGCAAA 169878 Query 48635 TATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 ||| || | ||| || || |||||| | || |||||||| ||||| || ||| Sbjct 169879 TATTAGCCTCTGCTGGTCAGGTGGGATC-CCTTCCTTGTCCTGGATCTTGGCCTTGACAT 169937 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || ||| ||||| | || || || |||||||||||||| || | Sbjct 169938 TGTCAATCGTATCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCCGTCAAAGTCTTGA 169997 Query 48754 CAAAAATCTGCATC 48767 |||| ||||||||| Sbjct 169998 CAAATATCTGCATC 170011 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || ||||| ||| || || || |||||||||| ||| | ||| Sbjct 170021 AGACGCAACACAAGGTGAAGCGTTGACTCCTTCTGTATGTTGTAATCAGCAAGAGTGCGA 170080 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || ||||| || || |||| ||||||||||| || | || ||| Sbjct 170081 CCATCCTCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCC 170140 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | ||||| |||||| |||| || Sbjct 170141 TTGTCTTGAATCTTCGCTTTAACATTGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTT 170200 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || ||||| |||||||| Sbjct 170201 ATGGTTTTACCGGTAAGGGTCTTGACAAATATCTGCAT 170238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380906178362064