Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq69 172 1e-37 seq146 96.9 6e-15 >seq69 Length=847923 Score = 172 bits (190), Expect = 1e-37 Identities = 439/659 (67%), Gaps = 12/659 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||||| || | || ||| ||| ||||| ||| ||| | Sbjct 357118 AAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGACTTCACGCGCTCCTCCGAGAG 357059 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || |||| | ||| || || || | ||||||||||||||| Sbjct 357058 CTTCGTCCTCAACAGAGTG---TAGATGAGGCACGCGAAATCGCAGTGCAAGCCTTCGTC 357002 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | ||||||||||| || || ||||||| ||| | | || ||||| Sbjct 357001 TCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTCTTCAGCCA 356942 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 |||||| | ||| || |||||||||||||| || || ||||| ||| || Sbjct 356941 GAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAGGCGACGAT 356882 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | ||| |||||| | | || ||| |||||| | | |||||| | ||||||| Sbjct 356881 ACGCTCCGCGAAAGTCTGGGATCC-GTC---GATCCACGTCATCGCCCACTGCGCCTTCT 356826 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGC-GTCC 48397 || || ||| || || || || || || || || || | | | ||| | || |||| Sbjct 356825 TCGCGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTC-CTTGTTGTCC 356767 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || ||| || ||||||||| || || | ||||| || |||||| Sbjct 356766 TTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCGATCGCGATC 356707 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 |||||||||||||| || | ||||| | || || || || | ||||| ||| Sbjct 356706 TGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGAACATCGGACATGAATC-GAGAAGC 356648 Query 48518 -AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 |||||||| || || || ||||| || || |||||||| ||||| ||||| | ||| Sbjct 356647 GAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAA 356588 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTC 48636 || |||||| || | ||||| | |||| | | |||| | || || ||||| Sbjct 356587 GTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGACCGTCCTGAGATAGATCGACTTC 356528 Query 48637 TTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 ||| | ||||| || || || || || |||||||| |||| || | || |||| Sbjct 356527 CTCCGCCGTCCAAAACGATGCTTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGT 356469 >seq146 Length=264749 Score = 96.9 bits (106), Expect = 6e-15 Identities = 366/568 (64%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 |||| || || || || || | ||| | ||||||||| || ||| | |||||||| Sbjct 120981 TAGATCAAACAAGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAG 121040 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || ||| |||||||| | || | | || ||||||||||| | ||| || Sbjct 121041 AAAGTGAGCCCAGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCG 121100 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAA-GCGTT 48300 ||||||||||| || || || ||||| || || | || |||| | | | Sbjct 121101 GAGAAGAAGATACCTTCGACGCAAGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGAT 121160 Query 48301 CTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | ||| |||||| | |||||| ||| | ||| || ||| || || || || Sbjct 121161 CC-GTC---GATCCATTTCATCGCCCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTC 121216 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 || || |||||||| | | | ||| ||| | |||||| ||| || Sbjct 121217 GATTGCGCGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGAG 121276 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 ||||||||| ||||| | |||||| || ||||||||||| ||||||||||| | || Sbjct 121277 ACTGTACATCTCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGC 121336 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540 ||| | || || || || | ||| | |||||||| || || || || Sbjct 121337 CTCGGAGACTTGAACATCGGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCGTC 121396 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || ||||| || ||||| || || | ||| || || |||| || | | || || Sbjct 121397 AGATGCGGCGAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGTTTAGGGC 121456 Query 48601 ATT---CCAG-CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || |||| | | ||| || | || || |||||||| | |||||||| || | Sbjct 121457 TTTTTCCCAGTCGCGGTA-ATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGAAG 121515 Query 48657 CGAGTGCTTTTTTGTACATGCCCCATAT 48684 | ||||| |||||||| |||| || Sbjct 121516 CTTCGGCTTTCTTGTACATCTCCCAGAT 121543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931453992325120