Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq161 547 2e-151 seq352 206 8e-49 >seq161 Length=278270 Score = 547 bits (606), Expect = 2e-151 Identities = 716/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| || ||||||||||| || ||||||||||| | |||||||| Sbjct 89982 AGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 90041 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 90042 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 90101 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||||||| || || | || |||| Sbjct 90102 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 90161 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | | ||||| || Sbjct 90162 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAA 90221 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || |||||||| || ||||| || || || Sbjct 90222 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATGTTGTAAGT 90281 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 90282 TTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 90341 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 ||| | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 90342 AATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATAC 90401 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 90402 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 90461 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 90462 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 90521 Query 18374 TCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 |||| || || | | ||||| || | || | |||||||| || || || ||||| ||| Sbjct 90522 ACCAATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCA 90579 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| |||||| || |||||||| || | ||||||||||||||| || ||||| ||| Sbjct 90580 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACCCATATAA 90639 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || | | |||||| | ||||| |||| ||| || || ||||| |||| | Sbjct 90640 CAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGC 90699 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 || || || | || ||||||||||||||| ||||| || || | ||| || || ||| Sbjct 90700 CATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAG 90759 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | || | || || ||||| || || |||||||| || || | | ||| || ||||| Sbjct 90760 GTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGT 90819 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | | Sbjct 90820 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAA 90879 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 | |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| Sbjct 90880 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 90939 Query 18792 TTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 90940 TCAGTGCTGGTTATCCAGTTACAGAA 90965 >seq352 Length=147189 Score = 206 bits (228), Expect = 8e-49 Identities = 334/481 (69%), Gaps = 17/481 (4%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||| ||||||||||| || ||||||||||| | |||| ||| Sbjct 88863 AGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAAGTT 88922 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTA--GGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||| | ||| | | |||||||| ||| || ||||| | || || || Sbjct 88923 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACTTGACTATCAACTACT------ 88976 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| ||||| ||||| || || |||||||||||| || || | || ||| Sbjct 88977 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTA 89036 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || |||||||| || ||||||||||||| | | |||||| Sbjct 89037 AACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTG 89096 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || | ||||||| | || ||||| || |||||||| || ||||| || || Sbjct 89097 AAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAA 89147 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||||||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 89148 GTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 89207 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 || || | |||| || | || ||||||||| |||| | || || ||| Sbjct 89208 CTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCAAAT 89267 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || || ||||| | ||| || || || |||||||| || ||||| || || |||||| Sbjct 89268 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAAT 89327 Query 18312 A 18312 | Sbjct 89328 A 89328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151306238540192