Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq161 560 1e-154 seq352 233 2e-56 seq17 86.0 8e-12 seq88 82.4 1e-10 >seq161 Length=278270 Score = 560 bits (620), Expect = 1e-154 Identities = 702/970 (72%), Gaps = 2/970 (0%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| ||||||| ||||| || ||||| |||||||| ||||| || ||||| ||||| Sbjct 89970 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTC 90029 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 90030 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 90089 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||| ||||||| ||| Sbjct 90090 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 90149 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 90150 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 90209 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 |||||||||||| || |||||||||||||| || || || ||||||||||||||||| Sbjct 90210 GGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 90269 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||| ||||| ||||||| | || ||||||| |||| Sbjct 90270 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 90329 Query 103522 AGTCGTCTCACGAA-CCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | || | || |||| ||||| ||||||||||| || || | Sbjct 90330 TGTGGTTTCCCTAATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGG 90388 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 |||| ||||| || ||||| || || | |||||| || |||||||| |||||||| || | Sbjct 90389 AACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 90448 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | ||| ||||||| || || || || || | ||||||| |||| | Sbjct 90449 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 90508 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760 | || |||||||||| ||||||| |||||| || || | ||||| |||||||||| Sbjct 90509 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAG 90568 Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820 | || ||||| ||| ||||| || ||||| ||||||||| | | |||||| |||| Sbjct 90569 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCAC 90628 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | ||||| | || | |||| ||||||||| Sbjct 90629 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCAC 90688 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 |||| || ||||| ||||||| ||||| |||||||| || || || || || | ||||| Sbjct 90689 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAA 90748 Query 103941 TTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAAC 104000 | || |||| |||| || ||||| || || || ||||| ||||| | || || | Sbjct 90749 TAGCTGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATC 90808 Query 104001 CAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGA 104060 ||| || ||||||||||| || || ||||| || ||||| || || | ||| || | | Sbjct 90809 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAA 90868 Query 104061 TGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACAT 104120 | || | ||||| | ||| | || |||||||||| ||||| ||||| |||| | Sbjct 90869 TAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGT 90928 Query 104121 AGAGACGGTT 104130 | |||||||| Sbjct 90929 AAAGACGGTT 90938 Score = 556 bits (616), Expect = 2e-153 Identities = 735/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 123094 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 123035 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || || ||||| ||| Sbjct 123034 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 122975 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || ||||||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 122974 TCAAATTCTGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 122915 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 122914 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 122855 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 122854 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 122795 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 122794 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 122735 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 122734 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 122675 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | ||||| | || || || ||||||||||| || ||||| | Sbjct 122674 GCGCATAGCAGAGCCGCGCCCAGTACGCCGGCGACTCCCATCATATGAAACGGGTTCAAT 122615 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 122614 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 122555 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 122554 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 122495 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | || Sbjct 122494 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGGGCA 122435 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || || ||||||||||| |||||| Sbjct 122434 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 122375 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 122374 GCCCATAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 122315 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 122314 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAA 122255 Query 102550 TTAGCACCTTCAAGGTAACTAG--AC--GCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605 || |||||| ||| ||| || || | || || |||||||| ||||| |||| Sbjct 122254 TTGCAACCTTC----TAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAA 122199 Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCC 102665 || || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| || Sbjct 122198 GGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACC 122139 Query 102666 AGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 122138 AGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 122082 >seq352 Length=147189 Score = 233 bits (258), Expect = 2e-56 Identities = 341/490 (70%), Gaps = 15/490 (3%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| ||||||| || || || |||||||||||||| ||||| || ||||| ||||| Sbjct 88851 AGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 88910 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| | ||| ||||| | || || ||||| || || | |||| |||| Sbjct 88911 CATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACT----TGACT 88966 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||| ||||||| ||| Sbjct 88967 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 89026 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 89027 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 89086 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| |||||||||| || || || ||||||||||| ||||| Sbjct 89087 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 89137 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||| ||||| ||||||| | || ||||||| |||| Sbjct 89138 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 89197 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | | | || |||| ||||| ||||||||||| || || | Sbjct 89198 TGTGGTTTCCCTGATCAAACTATAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGG 89256 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || || || || ||||| || || | |||||| || |||||||| |||||||| || | Sbjct 89257 AGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 89316 Query 103641 CGGCTTGGAA 103650 | || ||||| Sbjct 89317 CAGCCTGGAA 89326 >seq17 Length=826286 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||| || || ||| | || || |||||||| ||| | | | ||||| ||| Sbjct 68946 ACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACAAATCCTTCGCCGATCTGATCATCA 68887 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || || || |||| || || ||| ||||| ||||| | Sbjct 68886 TCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCGGCACAGCTC 68827 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||||||| || || ||||||||||| | || ||||| || || ||||| Sbjct 68826 GAGCAAGAACCAGCACGGCAAGAGTAAGGCAGATCGATTCCGGCTTCCTCCGCCGCGTCG 68767 Query 102992 AG 102993 || Sbjct 68766 AG 68765 >seq88 Length=738827 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| ||||| || || | ||| ||||| || | ||||| ||||| ||||| || Sbjct 251111 GGGTAAGCCACACAAGTTAAGACATAACCTTTCTCGAAGTGATCATCATCAAGAAACGAA 251052 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| ||||| || || || |||||||| || ||||| ||||||||||| Sbjct 251051 CCATCACACTGATCAACTTGGCCTTCCTCGATCTTACCGGCGCAAGTGGAACACGCACCG 250992 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || ||||||| || || || || || ||||| ||||| || || || || Sbjct 250991 GCTCTGCACGAGTAAGGCAAGTCGACTCCCGCCTCTTCAGCTGCGTCCAGTATGTACTGG 250932 Query 103004 TCATC 103008 || || Sbjct 250931 TCGTC 250927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633460004749440