Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq161 529 5e-146 seq352 262 1e-65 seq2526 82.4 2e-11 >seq161 Length=278270 Score = 529 bits (586), Expect = 5e-146 Identities = 716/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||| ||||| || || || |||||||| || || | Sbjct 89972 CCTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCA 90031 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 90032 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 90091 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| || | || | Sbjct 90092 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 90151 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||||| Sbjct 90152 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGG 90211 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 | || || || ||||||||||||||||| | || |||||||| || ||||| || |||| Sbjct 90212 AGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAA 90271 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | |||||||| ||||| |||||||| || ||||||| | || || | | ||| | Sbjct 90272 TGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 90331 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | ||| | || || |||| | ||| ||||||||| || | | Sbjct 90332 TGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAAC 90391 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 90392 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 90451 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 90452 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 90511 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || |||| || || | | ||| |||||||| ||||| || |||||||| | Sbjct 90512 AACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 90571 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || | ||| || || || | ||||||||||| || || | Sbjct 90572 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGAC 90631 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | ||||| |||| Sbjct 90632 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 90691 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| || ||||| || || | || || | Sbjct 90692 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 90751 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | | |||| | ||| ||||| || || ||||| || || | || || |||| Sbjct 90752 CTGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 90811 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 90812 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 90871 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || | || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 90872 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 90930 Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 |||||||| | ||| ||| | |||| ||| || Sbjct 90931 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 90965 >seq352 Length=147189 Score = 262 bits (290), Expect = 1e-65 Identities = 351/489 (72%), Gaps = 17/489 (3%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || || || || ||||||||||| || || || |||||||| || || | Sbjct 88853 CCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 88912 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGAT--CACCTGTCCATCAGC 21577 |||| ||| |||||||||| ||| |||||||| || || || ||| || | |||| | Sbjct 88913 TACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACTTGACTATCAAC 88972 Query 21578 AGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCC 21637 || |||||||| || ||||||||||| | |||||||||||| || | || Sbjct 88973 TACT------GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 89026 Query 21638 AAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACG 21697 | |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| Sbjct 89027 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 89086 Query 21698 GGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAAC 21757 ||||| || || | ||||||| | || |||||||| || |||||||| || Sbjct 89087 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 89137 Query 21758 AATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTC 21817 ||| |||||||| ||||| |||||||| || ||||||| | || || | | ||| Sbjct 89138 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 89197 Query 21818 AGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACT 21877 || || || | || | | || |||| | ||| ||||||||| || | Sbjct 89198 TGTGGTTTCCCTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 89257 Query 21878 CCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTC 21937 || |||||||| || || ||||| | ||||||||| || ||||||||||| |||||||| Sbjct 89258 GCCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 89317 Query 21938 AGCCTGGAA 21946 ||||||||| Sbjct 89318 AGCCTGGAA 89326 >seq2526 Length=25980 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || |||||||| || || ||||| | ||||||||| || ||||||||||| ||||||||| Sbjct 23878 CCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 23937 Query 21939 GCCTGGAA 21946 |||||||| Sbjct 23938 GCCTGGAA 23945 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || |||||||| || || ||||| | ||||||||| || ||||||||||| ||||||||| Sbjct 24169 CCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 24228 Query 21939 GCCTGGAA 21946 |||||||| Sbjct 24229 GCCTGGAA 24236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146196249263040