Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 7e-14 >seq2 Length=2373158 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || ||||| |||||||| || || | ||||| |||||||| || || Sbjct 1333085 TACCCTTTCTCTTGCCTCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCA 1333144 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||||| | ||| | || ||| ||||||| | |||| | ||| || | | Sbjct 1333145 ACATTGGAACAATACCATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCAC 1333204 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| || || || || |||||| |||| ||| | ||||| ||| Sbjct 1333205 GGATGTTGTGAATTGAAACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTT 1333264 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| | ||||| | ||||||||| | ||||| Sbjct 1333265 TCAATGTATCATATATTCCCTCGATGCTATCATCCTTCAT 1333304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253019127995600