Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq161 535 5e-147 seq352 268 1e-66 seq7 116 4e-21 seq768 93.3 5e-14 seq842 89.7 6e-13 >seq161 Length=278270 Score = 535 bits (592), Expect = 5e-147 Identities = 720/1000 (72%), Gaps = 2/1000 (0%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || || |||| ||| ||||||||||| ||||| ||||| ||||| | |||||||||||| Sbjct 89967 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAAC 90026 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152 ||||||||| | ||| || | ||| | || |||| |||| || | | ||| | Sbjct 90027 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 90086 Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212 | |||||| ||||||||||| || ||||||||||| | |||||| ||||| |||| || Sbjct 90087 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 90146 Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272 ||| | || || ||||| | || ||| || || || | |||| |||||| || | | Sbjct 90147 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 90206 Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332 | ||||||||||| |||||| |||||||| | || ||||| ||||| || || || Sbjct 90207 ACGGGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGC 90266 Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392 ||| |||||||| |||||||||||||| ||||| | ||||| | || || || | Sbjct 90267 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 90326 Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452 ||||| ||||| || || | | ||| || || | ||||||||||| || |||| Sbjct 90327 TTCTGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 90386 Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 || || ||||| | || ||||| ||| |||||| || || ||||| |||||||| || Sbjct 90387 GGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 90446 Query 124513 CTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572 ||| || ||||| || | |||||||||||||||||| ||||| || || ||||||||||| Sbjct 90447 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 90506 Query 124573 AGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGG 124632 ||| || || ||||||| |||||| | ||||| ||||| ||||| | || || Sbjct 90507 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 90566 Query 124633 TGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTG 124692 |||||||| |||||| |||||||||||||| || | | | | |||||||| | Sbjct 90567 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTC 90626 Query 124693 TCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACC 124752 | ||||| || | | ||||| | ||||| | || | | | ||||||||| Sbjct 90627 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 90686 Query 124753 ACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCC 124812 ||| || || | |||||||||||| | ||| ||||||||||| ||||| || || | || Sbjct 90687 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 90746 Query 124813 GATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AG 124871 ||||| || | |||| || ||||| || || || ||||| || || ||||| || Sbjct 90747 AATAGCTGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTA-AAGAAGAG 90805 Query 124872 AACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAA 124931 | || | || ||||| | || || || ||||| || ||||| || ||||| ||||| | Sbjct 90806 ATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGA 90865 Query 124932 CGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAA 124991 || ||| | | ||| || | |||| || ||||| | |||||||||||| |||| Sbjct 90866 TAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 90925 Query 124992 CATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 |||| | ||| | || |||| ||| | |||||| Sbjct 90926 TGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 90965 Score = 381 bits (422), Expect = 7e-101 Identities = 707/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 123098 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 123039 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 123038 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 122979 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || ||||| ||||| ||||| | || || || || || ||||| || || | Sbjct 122978 AGTCTCAAATTCTGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 122919 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | |||||||| || | || | || |||| | ||| | || || || Sbjct 122918 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTAC 122859 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 122858 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 122799 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 122798 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 122739 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 122738 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 122700 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || |||| || || || Sbjct 122699 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCCGCGCCCAGTACGCCGGCGAC 122640 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || |||||||| || || || ||||| | || | ||| | Sbjct 122639 TCCCATCATATGAAACGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 122580 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 122579 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 122520 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || |||| | || || || || | |||||||||||| ||| || || Sbjct 122519 ATAAATTAGGAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 122460 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| | | | Sbjct 122459 AGGTCGCAATTGAACAGATCGGGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 122400 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| ||||||||| || | ||| |||||||| || Sbjct 122399 GAAAGCGCCGTGGAGAGCAACAAAAGCCCATAGACCACCTAATTGACACCAACGAGTAAA 122340 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 122339 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 122280 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || ||||| || || || || | ||| ||| || | ||||| Sbjct 122279 AGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTGGCCAATCCATG 122220 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 122219 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGC 122160 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || || || || ||| |||||| Sbjct 122159 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 122100 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 122099 GTCATCCATAATATCAAA 122082 >seq352 Length=147189 Score = 268 bits (296), Expect = 1e-66 Identities = 355/492 (72%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || || |||| ||| ||||| ||||| ||||||||||| ||||| | |||||||||||| Sbjct 88848 TGGAGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 88907 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152 ||||||||| ||||| || | ||| | || |||| |||| || | | | | | Sbjct 88908 TTCCATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGT----ATTAATAACACTTG 88963 Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212 | |||||| ||||||||||| || ||||||||||| | |||||| ||||| |||| || Sbjct 88964 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 89023 Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272 ||| | || || ||||| | || ||| || || || | |||| |||||| || | | Sbjct 89024 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 89083 Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332 | || |||||||| || ||||||| | || ||||| ||||| || || || Sbjct 89084 ACGAGAATTGTTGAA--------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 89134 Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392 ||| |||||||| |||||||||||||| ||||| | ||||| | || || || | Sbjct 89135 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 89194 Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452 ||||| ||||| ||||| | | | | || || | ||||||||||| || |||| Sbjct 89195 TTCTGTGGTTTCCCTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAG 89254 Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 || || || || | || ||||| ||| |||||| || || ||||| |||||||| || Sbjct 89255 GGAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 89314 Query 124513 CTCTGCTTGGAA 124524 ||| || ||||| Sbjct 89315 CTCAGCCTGGAA 89326 >seq7 Length=1063282 Score = 116 bits (128), Expect = 4e-21 Identities = 154/212 (73%), Gaps = 14/212 (7%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || ||||||||||| |||||||| | Sbjct 450084 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCT 450025 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTG-----TC--CACTGACTGACCTACA 139427 | | || | || |||| || ||| ||| || ||||||| ||| | | Sbjct 450024 GCATCGCCA-----TACGCAGAGCTGGCTTTCCTGAAGAATCAACACTGAC--ACCAATA 449972 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || ||||| ||| |||||||||||| | | || || || || ||||| |||||| Sbjct 449971 ATCCTTCCAGGCATCATTCTCTTATACTCTTGCGAAGTAGCCAAAAACGCAGCGTGAGGA 449912 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 || || || ||||| |||| ||| |||||||| Sbjct 449911 CCACCATAACCCATTGGAACACCGAACCTTTG 449880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || || || |||| || | || |||||||| | || || | ||| Sbjct 449543 CATAGCCTCCGCAGCCGCGGTCCCTTCGTCCAGCAGCGATGCGTTAGACATGGGAAGTCC 449484 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||| | ||| ||| |||||| | || ||| | | |||||||| || Sbjct 449483 CGTGAGATCGGTGATCATCGTCTGGAAATTGAGCAGAGATTCGAGACGGCCCTGAGAGAT 449424 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 ||||||||| || |||||||| ||||||||| |||||||| Sbjct 449423 CTCAGCTTGGTAAGGAGTGTACTGAGTGTACCAAGCCGGATTCTC 449379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/111 (78%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCA 138218 ||| |||| | ||||| ||| |||||||| ||||| | ||||| || ||||||||| Sbjct 451971 AAAAGGTGCTAAATGTT--GCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCA 451914 Query 138219 TGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 || ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 451913 TGAGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 451863 >seq768 Length=145301 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| ||||| || |||||| || || ||||| || || Sbjct 42269 TTAAAGAGCGTTTCCACGTGGTAGAACTTCCTCAAGGAATATAAGGTTTTCATGAGGCTG 42210 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| | | || ||||| || | |||||| || || |||||||| Sbjct 42209 ATCTTGAGCCGCCATCCAAACACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 42150 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| | || ||| | | ||| ||||| | | || || || || ||||| || || | Sbjct 42149 AGTTTTAAATTCTAGATTTTCCGCTGCACGAAGTTCCTGGGAAACGAAGTCATAGGCACG 42090 Query 123046 GAGGTTAAGTGCTAGACCTAC 123066 ||||| | |||||||| || Sbjct 42089 TAGGTTCAAAGCTAGACCGAC 42069 >seq842 Length=174314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || || |||| ||| ||||| ||||| ||||||||||| ||||| | |||||||||||| Sbjct 148163 TGGAGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 148222 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACAT 124124 ||||||||| ||||| || | ||| | || || Sbjct 148223 TTCCATACCAAAGTTAGCACGGTTAATAATAT 148254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578949416735360