Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq161 574 6e-159 seq352 230 3e-55 seq17 122 1e-22 seq2526 86.0 8e-12 >seq161 Length=278270 Score = 574 bits (636), Expect = 6e-159 Identities = 723/993 (73%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 26724 CTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAA 26783 |||| ||||||| || || | || ||||| || || || | ||| || || || || | Sbjct 89973 CTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCAT 90032 Query 26784 TCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATC 26843 ||||| ||||||||| | || || |||||||| || | ||||| || || ||| Sbjct 90033 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 90092 Query 26844 AATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAG 26903 || || || || ||||| |||||||| || || ||||||||||| ||| | ||| | Sbjct 90093 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 90152 Query 26904 TGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGA 26963 || || ||||| || || || || ||||| || || | |||||| || || ||||| || Sbjct 90153 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGA 90212 Query 26964 GTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023 ||||||||| |||||||||||||||||| || || || || ||||| || || || || Sbjct 90213 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAAT 90272 Query 27024 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGT 27083 |||||| || ||||||||||||||||| | ||||| | || || ||| |||| || Sbjct 90273 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 90332 Query 27084 CGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCC 27143 || || | | | ||| || |||| || ||||||||| || || || || Sbjct 90333 GGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACC 90392 Query 27144 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGC 27203 |||||||| ||||| ||||| | |||||| || ||||||||||| || ||||| || || Sbjct 90393 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 90452 Query 27204 CTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAA 27263 ||||||||||| ||| |||| |||||||||||||| || ||||||||| |||| || || Sbjct 90453 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 90512 Query 27264 AGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGA 27323 | |||||||| | || |||| | ||| || ||| | ||||| || || ||||| || Sbjct 90513 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 90572 Query 27324 ATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCC 27383 |||||| ||| ||||| ||||||||||| | ||| | |||||||| ||||| || Sbjct 90573 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACC 90632 Query 27384 CATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTT 27443 ||||||| | | || | | ||||| | || | |||| ||||||||||||| Sbjct 90633 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 90692 Query 27444 ATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGC 27503 || | ||| ||||| | ||||| ||||||||||| ||||| || || | ||| || || Sbjct 90693 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 90752 Query 27504 ATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGC 27563 || | || | || ||||| ||||| || ||||| || || | ||| || |||| Sbjct 90753 TGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 90812 Query 27564 AACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||| |||||||||||||| |||||||| || || || || || |||||||||| ||| || Sbjct 90813 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 90872 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 | |||||| | || | || |||||||||| ||||| ||||| |||| || | Sbjct 90873 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 90932 Query 27684 ACGGTTGTTAGTTGATGTCACCCACTCACAGAA 27716 |||||| | ||| || | ||| | |||||| Sbjct 90933 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 90965 Score = 518 bits (574), Expect = 4e-142 Identities = 728/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 123099 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 123040 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| || |||| Sbjct 123039 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 122980 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | |||||| || ||||| || || || || || ||||| |||| Sbjct 122979 AAGTCTCAAATTCTGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 122920 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | ||| || || | | |||| || | | ||| | ||| | || || | Sbjct 122919 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 122860 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||||| Sbjct 122859 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 122800 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 122799 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 122740 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 122739 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 122680 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | ||||||| || || |||||||||||||| || |||| Sbjct 122679 GAATAGCGCATAGCAGAGCCGCGCCCAGTACGCCGGCGACTCCCATCATATGAAACGGGT 122620 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | ||| | || || ||||| |||| Sbjct 122619 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 122560 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| || || || | ||||| || ||||| ||||| | Sbjct 122559 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAA 122500 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| |||||||| || || || ||||| || || || | | || ||| Sbjct 122499 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGAT 122441 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| |||||||||||||||||||| | ||| || || |||||||||||| Sbjct 122440 CGGGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCA 122381 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | |||||| Sbjct 122380 ACAAAAGCCCATAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 122321 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224 ||||| |||| | | |||||| | | | | |||||| || || || || || || Sbjct 122320 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTT 122261 Query 24225 AGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACA 24284 | ||| || ||| || | ||||||||| || | |||||| || ||||| || ||| Sbjct 122260 AAAAAATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACA 122201 Query 24285 AAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGT 24344 || | ||| || || | |||||| || | || | ||| ||| |||| || | || Sbjct 122200 AAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGA 122141 Query 24345 CCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||||||||| ||||| || ||||| |||| | |||||| |||| || ||||| Sbjct 122140 CCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 122082 >seq352 Length=147189 Score = 230 bits (254), Expect = 3e-55 Identities = 343/488 (70%), Gaps = 13/488 (3%) Strand=Plus/Plus Query 26724 CTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAA 26783 |||| ||||||| ||||| | || || || || || || | ||| || || || || | Sbjct 88854 CTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 88913 Query 26784 TCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATC 26843 |||| ||||||||| | || || |||||||| || | |||| || ||| Sbjct 88914 ACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACTTGACT----ATC 88969 Query 26844 AATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAG 26903 || || || || ||||| |||||||| || || ||||||||||| ||| | ||| | Sbjct 88970 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 89029 Query 26904 TGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGA 26963 || || ||||| || || || || ||||| || || | |||||| || || ||||| || Sbjct 89030 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 89089 Query 26964 GTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023 ||||||| | |||||||||| || || || || ||||| || || || || Sbjct 89090 ATTGTTGA---------AACGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 89140 Query 27024 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGT 27083 |||||| || ||||||||||||||||| | ||||| | || || ||| |||| || Sbjct 89141 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 89200 Query 27084 CGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCC 27143 || || | || | | | || |||| || ||||||||| || || || || Sbjct 89201 GGTTTCCCTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 89260 Query 27144 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGC 27203 || ||||| ||||| ||||| | |||||| || ||||||||||| || ||||| || || Sbjct 89261 GCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 89320 Query 27204 CTGGAATA 27211 |||||||| Sbjct 89321 CTGGAATA 89328 >seq17 Length=826286 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | || ||||| ||||||||||||| ||||| || |||||||||| ||| Sbjct 68970 TCTTCTTTGTGGGTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACA 68911 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || ||||| | || ||||||||||| | ||| ||| ||| ||||| || | ||| Sbjct 68910 AATCCTTCGCCGATCTGATCATCATCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCA 68851 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || |||| ||||| ||||| || || | ||| ||||| |||||||| | ||| Sbjct 68850 GACACAACTTTACCGGCACAGCTCGAGCAAGAACCAGCACGGCAAGAGTAAGGCAGATCG 68791 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || ||||||| || || || |||| ||| Sbjct 68790 ATTCCGGCTTCCTCCGCCGCGTCGAGGACGTA 68759 >seq2526 Length=25980 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27120 GTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 27179 |||||||||| || || || || || ||||| ||||| ||||| | |||||| || || Sbjct 23856 GTGCATAGCACTAAATAGGGAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGG 23915 Query 27180 GTGCATAAGGATATTGTGTTCTGCCTGGAATA 27211 ||||||||| || ||||| || |||||||||| Sbjct 23916 GTGCATAAGAATGTTGTGCTCAGCCTGGAATA 23947 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27120 GTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 27179 |||||||||| || || || || || ||||| ||||| ||||| | |||||| || || Sbjct 24147 GTGCATAGCACTAAATAGGGAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGG 24206 Query 27180 GTGCATAAGGATATTGTGTTCTGCCTGGAATA 27211 ||||||||| || ||||| || |||||||||| Sbjct 24207 GTGCATAAGAATGTTGTGCTCAGCCTGGAATA 24238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665438099173760