Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq522 134 2e-26 seq109 131 2e-25 seq418 105 8e-18 seq146 93.3 5e-14 seq69 93.3 5e-14 seq874 82.4 9e-11 >seq522 Length=218374 Score = 134 bits (148), Expect = 2e-26 Identities = 200/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||||||| | ||| |||| | || || ||| || || || ||| Sbjct 161716 CCCGGTACGGGTAAGACCCTCTTGGCCAGAGCGGTGGCTGGAGAAGCAGGAGTGCCGTTC 161775 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || || | ||||||||| | ||||||||||||||||| || || Sbjct 161776 TTCTCATGCGCGGCTTCAGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCGTCTAGAGTC 161835 Query 175435 CGCGATCTCTT--TGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||||| || ||| || |||||| || || ||||| ||||| ||||||| Sbjct 161836 AGGGATCTGTTCGAGAAGGCGAAGGCGAAA--GCTCCTTGCATTGTTTTCATCGATGAGA 161893 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||| || ||||| | |||| | | ||||| ||| | | || ||| || ||||| || Sbjct 161894 TTGACGCTGTGGGAAGGCAAAGAGGAGCTGGGATGGGAGG--AGGAAACGATGAGAGGGA 161951 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| || | || ||||||||||| ||| Sbjct 161952 ACAGACGATTAATCAGCTGTTGACTGAGATGGATGGGTTT 161991 >seq109 Length=331296 Score = 131 bits (144), Expect = 2e-25 Identities = 297/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || |||||| |||||| ||| Sbjct 37920 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGGATCCCGAAAGGT 37979 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || || || | || |||||| || ||| Sbjct 37980 GTTCTCCTTGTTGGTCCTCCCGGTACTGGGAAAACGCTGTTGGCAAAAGCCATTGCTGGT 38039 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| | | ||| | | | ||||| ||||||||||| ||| Sbjct 38040 GAAGCCGGTGTGCCCTTCTTTTCGATCTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 38099 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| |||||| ||||| || || ||| ||| || ||| || || ||| Sbjct 38100 GTTGGTGCCTCAAGGGTCCGCGACCTTTTCAAAAAGGCCAAGGAGAATGCTCCTTGCATT 38159 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534 || || ||||||| || ||||| || || | |||| | | | || | | | || Sbjct 38160 GTGTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATCGGTGG--AG 38217 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || |||||||| ||| | ||||| || || || ||||||||||| ||||| Sbjct 38218 GTAATGATGAAAGAGAACAGACACTGAATCAGCTCCTGACTGAGATGGATGGTTTTGAGG 38277 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | |||||| || | || |||| || || || | | ||||| ||||| |||| Sbjct 38278 GTAACACTGGCGTTATCGTAGTTGCTGCAACCAACAGGGCAGATATTCTTGACTCCGCCT 38337 Query 175655 TCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || |||||||| || Sbjct 38338 TGCTGAGACCAGGACGTTTTGACCG 38362 >seq418 Length=246988 Score = 105 bits (116), Expect = 8e-18 Identities = 272/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || |||||| | |||||| ||| Sbjct 168696 GTGGAGTTTCTGAAGAAGCCAGAGAGGTTCACTGCGGTTGGTGCAAGGATCCCGAAAGGT 168637 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || ||| ||| || |||||||| || || || | || ||||| || ||| Sbjct 168636 GTTCTCCTCATTGGTCCTCCTGGTACGGGGAAAACTCTTTTGGCGAAGGCCATTGCTGGT 168577 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||| | | | ||||| ||||||||||| ||| Sbjct 168576 GAAGCTGGTGTGCCTTTCTTCTCCATCTCCGGTTCTGAGTTTGTTGAGATGTTTGTGGGT 168517 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || || || ||||| || | | || || || || || ||| Sbjct 168516 GTTGGTGCATCGAGAGTCCGTGATCTTTTCAAGAAAGCTAAAGAGAACGCTCCTTGCATT 168457 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || || | |||| | | | || |||| | Sbjct 168456 GTCTTTGTGGATGAAATCGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGTGG---A 168400 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || ||||||| || ||||| ||||||||||| ||||| Sbjct 168399 GGTAATGATGAAAGAGAACAGACTCTTAATCAGCTGCTCACTGAGATGGATGGATTTGAA 168340 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | ||||| ||| | || |||| || || ||| | | || || ||||| Sbjct 168339 GGTAACACTGGTATTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGA 168287 >seq146 Length=264749 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| | || || | | ||| | |||| |||||| ||||||||| | ||| Sbjct 121222 GCAATCGAAACCATTCCCTGCGTCGCGAAAATGGCGCGATGGGCGATGAAATGGATCGAC 121163 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| |||||| || || | | || || || || || || ||||||||| Sbjct 121162 GGA---TCTCAGAGCTTCGCTGAACGTATCGTGGCTTTCGCTTGCGTCGAAGGTATCTTC 121106 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | |||| ||| ||||||| || ||| | ||||| || || Sbjct 121105 TTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGAGGTTTAATGCCTGGGCTC 121046 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || ||| | || || ||||| || || || ||| Sbjct 121045 ACTTTCTCCAACGAATTGATCTCGCGAGACGAAGGCCTTCAC 121004 >seq69 Length=847923 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| | || || | | |||||||||| | ||||| |||| ||| | ||| Sbjct 356798 GCAATCGAAACCATCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCGATGACGTGGATCGAC 356857 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | || | | ||||| ||||| | | || || || || || || || |||||| Sbjct 356858 GGA---TCCCAGACTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAAGGCATCTTC 356914 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | |||| ||| ||||||| || || |||||||| || ||| Sbjct 356915 TTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCGGGCTCATGCCGGGACTA 356974 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 |||||| || || | || || ||||| || || Sbjct 356975 ACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGG 357009 >seq874 Length=86422 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 |||| || || ||||| | ||| ||||||| | ||||||||| ||| ||||||||| Sbjct 39916 GAAAGGCCTCAACACATGCTGATGAGGGTCGCTGTTGGCATCCACAAGGACGACATTGAT 39857 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 || | | |||| ||| | |||||| || | ||||| ||| || | || || Sbjct 39856 TCCGCAATCAAGACTTACCATTTGATGTCGCAGAGATGGTTCACTCATGCTTCCCCTACT 39797 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||||||||||| || |||||||| || ||| Sbjct 39796 CTCTTCAATGCAGGAACACCAAGGCCTCAG 39767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596519130211840