Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq161 643 1e-179 seq352 302 5e-77 seq768 136 4e-27 seq842 100 3e-16 seq3237 91.5 2e-13 seq2526 82.4 9e-11 seq1 82.4 9e-11 >seq161 Length=278270 Score = 643 bits (712), Expect = 1e-179 Identities = 739/994 (74%), Gaps = 0/994 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | |||||||| | |||||||| || | || ||||||||| | Sbjct 90966 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 90907 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||| || || | ||| | |||||| | || || |||| ||||| |||||||| Sbjct 90906 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || |||||||| || |||| ||||| | || || ||||| Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 90787 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || || ||||| || |||| | || || |||||| | || || || || || Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 90727 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 ||||||||| ||||| |||| |||||||| || ||||||||||||| |||| |||| Sbjct 90726 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 90667 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||| | |||| | | || ||||||||||| |||||||| || ||| Sbjct 90666 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCG 90607 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 ||| ||||||||||| ||||| |||||| || ||||| || || || ||||| | ||| Sbjct 90606 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 90547 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 || ||| | | || || | |||||||| ||||| ||||||| ||||| || ||||| Sbjct 90546 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 90487 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| || Sbjct 90486 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 90427 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 || || ||| | || || ||||| ||||| || || | |||||||||||||| || Sbjct 90426 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 90367 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 ||||| |||||| | | |||| || || || |||| ||||| || | || Sbjct 90366 TTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 90307 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| || || Sbjct 90306 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGG 90247 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 || |||||||||||||| ||| |||||||||||||| || || || |||||| | || Sbjct 90246 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGC 90187 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 || ||||| || || || || ||||| || || | || | ||| ||||| ||||| Sbjct 90186 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 90127 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 90126 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 90067 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 ||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| || Sbjct 90066 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 90007 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGAG 166761 ||||| ||||| || ||||| ||||||| |||| Sbjct 90006 TCACAATTTCCCTCTAGACCTAGCTGCTGTTGAG 89973 Score = 545 bits (604), Expect = 3e-150 Identities = 736/1021 (72%), Gaps = 8/1021 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| || || |||||||| || |||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGGTGCGAACTTT 167190 || || ||||||||||||||| | || ||||| || | || ||| || ||| Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGC---CAGTTCCTATTTAGAAGGTTGCAATTTT 122258 Query 167191 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGG 167250 | || || |||||| |||||| || || | | | |||||||| | | || ||| Sbjct 122259 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGG 122318 Query 167251 GGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTT 167310 ||||||||| | ||||| ||||| | ||| ||| | || || || ||||||||| Sbjct 122319 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTT 122378 Query 167311 GTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 167370 || || |||||||| || || || | || ||||| ||| | || || ||||||||||| Sbjct 122379 GTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCC 122438 Query 167371 CGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTT 167429 || ||| | | | || || || ||||| || || ||||||||||| |||||||| || Sbjct 122439 CGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 122497 Query 167430 CGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTT 167489 ||| || ||||| | ||||| || |||||| | ||||||||||| || || Sbjct 122498 TGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 122557 Query 167490 CGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACT 167549 || || || || || || |||||| ||||||| ||||||| || || || |||||| | Sbjct 122558 TGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATT 122617 Query 167550 GAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAAT 167609 ||| || |||||||||||||| || || || | ||||| | || |||| | || || Sbjct 122618 GAACCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTAT 122677 Query 167610 CCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAA 167669 ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 122678 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 122737 Query 167670 GGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTG 167729 || || | | ||||| | ||||| |||||||||||||| || || ||||| || || Sbjct 122738 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 122797 Query 167730 GTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATT 167789 ||| || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||||| Sbjct 122798 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 122857 Query 167790 CGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCT 167849 || || || | || | |||| | |||| | | ||||| ||| | || || Sbjct 122858 TGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCT 122917 Query 167850 TCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAAC 167909 ||||| || || |||||||| || || ||| | || ||||| |||||||| ||||| || Sbjct 122918 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGAC 122977 Query 167910 TTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGA 167969 ||||||||||||||| || ||| | || |||||| |||| || ||| | || || || Sbjct 122978 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 123037 Query 167970 TCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATA 168029 ||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 123038 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 123097 Query 168030 A 168030 | Sbjct 123098 A 123098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| |||||||||||||||| ||| Sbjct 200065 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 200006 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 200005 CCTACTTGGGGAG 199993 >seq352 Length=147189 Score = 302 bits (334), Expect = 5e-77 Identities = 358/486 (74%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 ||||| ||||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 166336 TTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGA 166395 ||||| ||| | |||||||||||||| || ||||| |||| | | | | || Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 166396 GAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACA 166455 || || || |||| ||||| || | ||||||| ||||| |||||||||||||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 166456 TACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 166515 |||||||| ||||| ||||||||||| || || || |||||||||| ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 166516 AACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 166575 ||||| || || || || || |||||| | || || ||||| || || || || ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 166576 ACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 166635 || || | || | ||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 166636 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGT 166695 | ||||| |||| |||| | || || ||||| ||| || ||||||| ||| Sbjct 88975 GTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 166696 CTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCT 166755 | |||||||||||||||||||| ||||| || ||||||||||| || || || |||||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 166756 GCTGAG 166761 | |||| Sbjct 88859 GTTGAG 88854 >seq768 Length=145301 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAG 167892 ||||| ||| | || || ||||| || || |||||||| || || | | || ||||| Sbjct 42072 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAACTTCGTGCAGCGGAA 42131 Query 167893 GATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCA 167952 ||| ||| ||| ||||||||||||||||||| || ||| | || |||||| |||| | Sbjct 42132 AATCTAGAATTTAAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGTT 42191 Query 167953 TGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCA 168012 ||| | || || ||||| |||||||| ||| || | |||| ||||||||||| ||| Sbjct 42192 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCTTGAGGAAGTTCTACCA 42251 Query 168013 CGAGGCAACGCACTATAA 168030 || || ||||| || ||| Sbjct 42252 CGTGGAAACGCTCTTTAA 42269 >seq842 Length=174314 Score = 100 bits (110), Expect = 3e-16 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 26606 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 26665 Query 18179 GGTTCAAATCCTACCTGGGGAG--TTGTT 18205 |||||||||||||| ||||||| ||||| Sbjct 26666 GGTTCAAATCCTACTTGGGGAGATTTGTT 26694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 166676 ATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACT 166735 || || ||||||| ||| | |||||||||||||||||||| ||||| || ||||||| Sbjct 148254 ATATTATTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACT 148195 Query 166736 TCCCCCTCGACCTCGCTGCTGCTGAG 166761 |||| || || || ||||||| |||| Sbjct 148194 TCCCTCTAGATCTAGCTGCTGTTGAG 148169 >seq3237 Length=30455 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| |||||||||||||||| ||| Sbjct 13163 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 13104 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 13103 CCTACTTGGGGAG 13091 >seq2526 Length=25980 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 ||||| ||||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 166336 TTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 ||||| ||| | ||||||||||||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 ||||| ||||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 166336 TTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 ||||| ||| | ||||||||||||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 >seq1 Length=1953584 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||||||||||| || || ||||| | | ||||||| |||||||||||||||| ||| Sbjct 1939190 TTCCTCAGTAGCTTAGTGGTAGAGCGGTTGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 1939131 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 1939130 CCTACTTGGGGAG 1939118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561200518419200