Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq161 529 5e-146 seq352 262 1e-65 seq2526 82.4 2e-11 >seq161 Length=278270 Score = 529 bits (586), Expect = 5e-146 Identities = 716/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | |||||||||||| || ||| || || Sbjct 90905 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | || || ||||| Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 90787 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || ||||| ||| | |||| | | | || || || | || || ||||| || Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 90727 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||||| | ||||||||||||| |||||||| ||||| | |||| | || Sbjct 90726 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 90667 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || || ||||||||||| | || Sbjct 90666 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCG 90607 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 90606 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 90547 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || ||||||||||| |||||| | || || Sbjct 90546 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 90487 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| ||| | || ||||||||||||||||| ||||||||||| || Sbjct 90486 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 90427 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||| | ||||| || || ||||| || || | || ||||||||| || Sbjct 90426 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 90367 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | ||| | || || || ||| | | || || | || Sbjct 90366 TTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 90307 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||| ||||| |||||||| ||||| || ||||| || |||||||| Sbjct 90306 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGG 90247 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || || |||||| | | |||||||| | || Sbjct 90246 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGC 90187 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | || ||||||||||| Sbjct 90186 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 90127 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || |||||||| | | | | | | |||| || || || || Sbjct 90126 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 90067 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 90066 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 90007 Query 42193 ACACAACTTCCCGCTTGACCTTGCATCCGTGGAGG 42227 ||||| ||||| || ||||| || | || |||| Sbjct 90006 TCACAATTTCCCTCTAGACCTAGCTGCTGTTGAGG 89972 >seq352 Length=147189 Score = 262 bits (290), Expect = 1e-65 Identities = 351/489 (72%), Gaps = 17/489 (3%) Strand=Plus/Minus Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800 ||||||||||||||||| ||||||||||| || ||||||||| | ||||| || || ||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGT 41860 ||||| || | || ||||||||| ||| | |||| || | | || | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 41861 GAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACT 41920 || || || ||| | | || || | ||||||| || |||||||| ||||| ||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 41921 TACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980 ||||| ||||| |||||||| || |||||||| || | ||||||| | || Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 41981 AATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTT 42040 || ||||| ||| | | |||||||| | || || ||||| || ||||||||||||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 42041 GCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCT 42100 |||| | || | || |||||||||||| | ||||||||||| || |||||||| Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC- 88977 Query 42101 CTGCTAGCTGCTGATGGACAGGTG--ATCAACACCTGGGCTGACATTCTTAACCGTGCCA 42158 || | |||| | || ||| || || || |||||||| ||| |||||||||| | Sbjct 88976 -----AGTAGTTGATAGTCAAGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 42159 ACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCAT 42218 || |||| | || || |||||||| || || || ||||||||||| || || || || Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTG 88862 Query 42219 CCGTGGAGG 42227 | || |||| Sbjct 88861 CTGTTGAGG 88853 >seq2526 Length=25980 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800 ||||||||||||||||| ||||||||||| || ||||||||| | ||||| || || ||| Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 41801 TTTGGTGG 41808 ||||| || Sbjct 23885 TTTGGCGG 23878 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800 ||||||||||||||||| ||||||||||| || ||||||||| | ||||| || || ||| Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 41801 TTTGGTGG 41808 ||||| || Sbjct 24176 TTTGGCGG 24169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202648748672