Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq161 547 8e-151 seq352 280 2e-70 seq842 89.7 6e-13 >seq161 Length=278270 Score = 547 bits (606), Expect = 8e-151 Identities = 709/977 (73%), Gaps = 12/977 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | | Sbjct 90943 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 90884 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 90883 CAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 90824 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || || ||||| || | | Sbjct 90823 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTC 90764 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| || || |||||| | || || || || || |||||||| ||| | |||||| Sbjct 90763 CTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATG 90704 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 90703 AATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 90646 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| | ||||||||| || |||||| || ||||||||||||| Sbjct 90645 -AGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 90587 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | ||||||||| || || || || | ||||| ||||| ||| | | || || Sbjct 90586 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAA 90527 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | |||||||| ||| ||||||| |||||||| || |||||||||||||| |||| || Sbjct 90526 TTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 90467 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||||| || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 90466 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 90407 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| Sbjct 90406 CTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 90347 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | || | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 90346 TGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 90287 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 |||||||||| |||||||| || |||||||| || || || || | |||||||| |||| Sbjct 90286 AAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 90227 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | ||||||||||| | | | || |||||| | || || ||||| || || | | Sbjct 90226 CTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 90167 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || ||||| |||||||| || |||||||| |||| Sbjct 90166 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 90107 Query 155828 ACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||| || ||||| || |||| || || || ||| ||||| || ||| ||| Sbjct 90106 ACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTA 90050 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||| ||||| || ||||| |||||||| |||||||| | Sbjct 90049 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAG 89990 Query 155945 ACCTTGCTGCTGCTGAG 155961 |||| ||||||| |||| Sbjct 89989 ACCTAGCTGCTGTTGAG 89973 >seq352 Length=147189 Score = 280 bits (310), Expect = 2e-70 Identities = 355/486 (73%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 155476 TTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTG 155535 ||||| || || ||||| || ||||||||||| || |||||| | || ||||| ||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGT 155595 || || || || || || ||||||||| ||||| ||||| || | | | ||| | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 155596 GAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT 155655 ||||| || || | || ||| || | ||||||| ||||| ||||||||||||||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 155656 TATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTC 155715 || |||||||| ||||||||||| || || || || | ||||||| || ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TTC 89096 Query 155716 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCA 155775 ||||| || | | | || |||||| | || || ||||| || || | || ||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 155836 GTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGT 155895 ||||| || |||| | || || ||| ||||| || ||| ||||||| ||| Sbjct 88975 GTAGTTGA---TAGT-CAAGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 155896 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||||||||||| ||||| || ||||| ||||||||||||||||| || || |||||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 155956 GCTGAG 155961 | |||| Sbjct 88859 GTTGAG 88854 >seq842 Length=174314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 155878 ATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 155937 ||| ||||||| ||| ||||||||||||| ||||| || ||||| |||||||||||| Sbjct 148252 ATTATTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 148193 Query 155938 CCTCTTGACCTTGCTGCTGCTGAG 155961 ||||| || || ||||||| |||| Sbjct 148192 CCTCTAGATCTAGCTGCTGTTGAG 148169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584785722942080