Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq161 583 1e-161 seq352 320 2e-82 seq2526 100 3e-16 seq842 82.4 9e-11 >seq161 Length=278270 Score = 583 bits (646), Expect = 1e-161 Identities = 733/1002 (73%), Gaps = 18/1002 (2%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| |||||||| |||||||| ||||| || ||||||||||| Sbjct 89970 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTC 90029 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 90030 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 90086 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 90087 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 90146 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 90147 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 90206 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | |||||||||||| ||||| ||||||||||| || || || || |||||||| || Sbjct 90207 ACGGGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGC 90266 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 90267 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 90326 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| || || | | |||||| || | ||||| |||||||||||||| || Sbjct 90327 TTCTGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 90386 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 ||||| ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 90387 GGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 90446 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 90447 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 90506 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| |||||||| | || |||| |||||| ||||| || || | || || Sbjct 90507 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 90566 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||| | Sbjct 90567 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTC 90626 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 90627 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 90683 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 ||||| || || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 90684 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 90743 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || || || |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 90744 ACCAATAGCTGCAGAGGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAG 90803 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 90804 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 90863 Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 90864 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 90920 Query 68300 ACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 |||| || | || || ||| ||| | ||||||||| Sbjct 90921 TCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 90962 >seq352 Length=147189 Score = 320 bits (354), Expect = 2e-82 Identities = 365/491 (74%), Gaps = 17/491 (3%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| || || ||||||||||||||||| ||||| || ||||||||||| Sbjct 88851 AGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 88910 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAAT--CACTTTACCACCT 67466 ||| |||| || | ||||| || || ||||||||| ||| ||||| || | Sbjct 88911 CATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACTTGACTA--- 88967 Query 67467 GCGTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACA 67526 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | | Sbjct 88968 ---TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 89024 Query 67527 CCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTT 67586 || | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 89025 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 89084 Query 67587 CTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCA 67646 | || ||||||||| |||||||||| || || || || ||||||||||| Sbjct 89085 CGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 89135 Query 67647 ACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGC 67706 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 89136 ACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTT 89195 Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 || || ||||| ||||| | | | |||| || | ||||| |||||||||||||| || Sbjct 89196 TCTGTGGTTTCCCTGATCAAACTATAAGTTACCAAGGAACCATGCATAGCACTAAATAGG 89255 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 || || || |||||||| ||||| || | ||| || |||||||||||||| ||||||||| Sbjct 89256 GAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGC 89315 Query 67827 TCTGCTTGGAA 67837 || || ||||| Sbjct 89316 TCAGCCTGGAA 89326 >seq2526 Length=25980 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 67748 GTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGG 67807 ||||||||||||||| || || || || |||||||| ||||| || | ||| || ||||| Sbjct 23856 GTGCATAGCACTAAATAGGGAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGG 23915 Query 67808 GTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 ||||||||| ||||||||||| || ||||| Sbjct 23916 GTGCATAAGAATGTTGTGCTCAGCCTGGAA 23945 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 67748 GTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGG 67807 ||||||||||||||| || || || || |||||||| ||||| || | ||| || ||||| Sbjct 24147 GTGCATAGCACTAAATAGGGAGCCGCCAAATACACCAGCTACACCTAACATGTGAAATGG 24206 Query 67808 GTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 ||||||||| ||||||||||| || ||||| Sbjct 24207 GTGCATAAGAATGTTGTGCTCAGCCTGGAA 24236 >seq842 Length=174314 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| || || ||||||||||||||||| ||||| || ||||||||||| Sbjct 148166 AGCCTCAACAGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 148225 Query 67409 CATTCCAA 67416 ||| |||| Sbjct 148226 CATACCAA 148233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566899236266880