Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq49 122 2e-22 >seq49 Length=794425 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| || | ||| |||| || | || | ||| || ||||| || || Sbjct 170921 ATACCTCCTCTTAACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCA 170980 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| |||||||| || | ||||||||||| ||| Sbjct 170981 GCCAAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGA 171040 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||||||||| || || || | || | ||| || ||||| || |||| Sbjct 171041 GGGATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCA 171100 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 171101 ACTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||| |||||| || | ||||| || || || || Sbjct 170237 ATACCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCT 170296 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| | ||| |||| ||||| || || || || | |||||| || || ||| Sbjct 170297 GCAAGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGA 170356 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||| || || ||| Sbjct 170357 GGGATCCCTTCCTTGTCTTGAATCTTTGCCTTGACATTGTCAATAGTGTCCGAGCTTTCA 170416 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||||| ||||| ||||| || || || || || || ||||| Sbjct 170417 ACTTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 170466 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| ||||| ||||| || || | |||||||||||| ||||| |||||||| || Sbjct 170083 ATCCTCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGGATTCCTTCCTT 170142 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| || || || || ||| ||||| | ||||| Sbjct 170143 GTCTTGAATCTTCGCTTTAACATTGTCGATTGTGTCTGAGCTCTCCACTTCCAATGTTAT 170202 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || |||||||| ||||| Sbjct 170203 GGTTTTACCGGTAAGGGTCTTGACAAATATCTGCAT 170238 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||||||| | ||| |||| |||| || | |||||| ||||| || || Sbjct 170465 ATACCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGACTCTTTCTGGATATTGTAATCA 170524 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||||| || || || || | ||||||||| || ||| Sbjct 170525 GCGAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGTCTCTGTTGGTCCGGA 170584 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | ||| | ||| || || || || |||| Sbjct 170585 GGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCGATTGTGTCTGAGCTCTCA 170644 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || || ||||| || || || ||||| Sbjct 170645 ACTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 170694 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||| | ||| |||| || | || | |||||| ||||| Sbjct 171142 AATTTGCATACCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATATT 171201 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | |||| ||| || | ||||| |||||||| || | ||||| || Sbjct 171202 GTAATCAGCCAGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTG 171261 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| |||||||||||||| || || |||| || | || || || || || Sbjct 171262 GTCGGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGA 171321 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || ||||| || || || ||||| || ||||| Sbjct 171322 GCTTTCTACCTCGAGGGTTATCGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||||||| | ||| |||| |||| || | ||||| ||||| || || Sbjct 170693 ATACCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCT 170752 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | || || || || || || | ||||| || || ||| Sbjct 170753 GCAAGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGA 170812 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| ||||| || || |||| Sbjct 170813 GGAATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCCGAGCTCTCA 170872 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 170873 ACTTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899578289237760