Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq49 125 1e-23 seq442 89.7 8e-13 seq65 89.7 8e-13 >seq49 Length=794425 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| || || ||||||| || || Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || || ||||||||||| || ||||| || ||| Sbjct 171090 GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCAA 171031 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||||||||| |||||||| ||| | | ||||| | ||||| | Sbjct 171030 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACA-- 170973 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| ||| | || ||||| || || | || |||||||| ||| Sbjct 170972 ATATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGGT 170923 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | || || || || || || | || || ||| || Sbjct 171378 ATGCAGATCTTTGTTAAGACTCTTACAGGCAAGACGATAACCCTCGAGGTAGAAAGCTCG 171319 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || || ||||||||||| || ||||| || || Sbjct 171318 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCCGACCAG 171259 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||| |||||||| ||| | ||||| | | ||||| ||| Sbjct 171258 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGATGGCCGAACTCTGGCTGATTACAAT 171199 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || ||||| || || | || || ||||| ||| Sbjct 171198 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTAGGTTGAGAGGTGGT 171151 >seq442 Length=166222 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| ||||| || || || || || || ||| || Sbjct 81330 ATGCAGATCTTCGTCAAGACCTTGACGGGAAAGACCATCACTTTGGAGGTTGAAAGCTCC 81389 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| || || || || || || ||||| || || Sbjct 81390 GACACCATTGACAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCGGACCAG 81449 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||||||||| ||| | || || | ||||| ||| Sbjct 81450 CAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAT 81509 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | |||||||| || || Sbjct 81510 ATCCAGAAAGAGTCAACGCTTCACTTGGT 81538 >seq65 Length=625306 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| ||||| || || || ||||| | || || || || Sbjct 275808 ATGCAGATCTTCGTTAAAACCTTGACGGGCAAGACCATTACCCTGGAGGTGGAGAGCTCG 275867 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || || ||||||||||| ||||| || || Sbjct 275868 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGATCAG 275927 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||||| |||||||| ||||| |||||| || | || || || Sbjct 275928 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACATTGGCTGACTACAAC 275987 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || ||||| Sbjct 275988 ATCCAGAAGGAGTCTACACTTCACTTGGTGTT 276019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731810083628800