Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq49 125 1e-23 seq466 87.8 4e-12 >seq49 Length=794425 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATA-CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||||| ||||| | || ||| | | || || | || | ||| || |||||| ||||| Sbjct 170921 ATACCTCCTCTTA-ACCTAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATC 170979 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || |||| || | |||||||| |||||||| | ||||||||||| || Sbjct 170980 AGCCAAAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGG 171039 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||||||||| || || ||| || ||||| || | ||| || || Sbjct 171040 AGGGATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTC 171099 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| ||||| | ||||||| ||| || ||||| Sbjct 171100 AACTTCTAGGGTGATGGTTTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| || || | || | || | ||| || || || |||||| Sbjct 170009 ATCCCACCACGAAGACGCAACACAAGGTGAAGCGTTGACTCCTTCTGTATGTTGTAATCA 170068 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||| || || ||||| | |||||||||||| || Sbjct 170069 GCAAGAGTGCGACCATCCTCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGA 170128 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||| ||||| || | ||||| || Sbjct 170129 GGGATTCCTTCCTTGTCTTGAATCTTCGCTTTAACATTGTCGATTGTGTCTGAGCTCTCC 170188 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||||||||| || | || || | |||||||||||| Sbjct 170189 ACTTCCAATGTTATGGTTTTACCGGTAAGGGTCTTGACAAATATCTGCAT 170238 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAA-TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||||||||||| | || ||| || || || | || | |||||| |||||| ||||| Sbjct 171149 ATACCACCTCTCA-ACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATC 171207 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||||| |||| || | |||||||| |||||||| | ||||| || || || Sbjct 171208 AGCCAGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGG 171267 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||||||||| || || || || || || || | || || ||| Sbjct 171268 AGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTTTC 171327 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || || || || || || | || |||| ||| |||||||| Sbjct 171328 TACCTCGAGGGTTATCGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 171378 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || ||||| || || | ||||| || || ||||| Sbjct 170237 ATACCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCT 170296 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||||| ||||| || || | |||||| || || || Sbjct 170297 GCAAGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGA 170356 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| |||| || || ||| Sbjct 170357 GGGATCCCTTCCTTGTCTTGAATCTTTGCCTTGACATTGTCAATAGTGTCCGAGCTTTCA 170416 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| || || | || || | || |||||||| Sbjct 170417 ACTTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 170466 >seq466 Length=125450 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | || || || || | ||| | |||||| ||| || ||||| | Sbjct 78532 CCACCTCTGAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCC 78591 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | |||||| |||||||| || | |||||||||||| |||||| Sbjct 78592 AGCGTCCGACCATCTTCTAGTTGTTTCCCAGCAAATATCAGTCTCTGTTGATCCGGTGGT 78651 Query 192430 ATTCCTTCTTTATCTTGTATT 192450 || || ||||| || ||| || Sbjct 78652 ATCCCCTCTTTGTCCTGTTTT 78672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984394630816800