Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq180 129 2e-24 seq418 104 7e-17 >seq180 Length=236200 Score = 129 bits (142), Expect = 2e-24 Identities = 280/412 (68%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || ||||| || | ||| || ||| | Sbjct 61677 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTTTGCTCACGTTCGTCGTTTCCTC 61736 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| || || |||||||||||||| || |||||||| | Sbjct 61737 CTCCTAAA----CCGGTTC-CTCTGATTCTT-CCAACAGCATCAATCTCATCAATGAACA 61790 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 || ||| || |||| |||| || | ||| || || ||||| || | ||||| Sbjct 61791 CCAAACAAGGCGAATTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGC 61845 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| || || || |||| | | | || | ||| Sbjct 61846 TCCTACACCAACAAACATCTCTATGAACTCCGAGCCGGACAATGAGAAAAACGGAACACC 61905 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 |||||| || |||| ||| | |||| || || || || |||||||| ||||| || Sbjct 61906 TGCTTCTCCGGCTATGGCCTTGGCCAAGAGAGTTTTTCCGGTTCCAGGCGGTCCGGTCAA 61965 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 || || || || || | ||| ||||| || || | ||||||| ||| | | || | Sbjct 61966 TAAGACGCCTTTGGGGATTTTAGCCCC-CAAGGCTGAGAATTTCTCTGGGGTTCTCAAGA 62024 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || ||||| || |||| || | || || || || |||||||||||| Sbjct 62025 ACTCAACAATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 62076 >seq418 Length=246988 Score = 104 bits (114), Expect = 7e-17 Identities = 316/474 (67%), Gaps = 26/474 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 || || ||||| || ||||| || | ||| | |||| | | ||| ||| |||||||| Sbjct 168293 ATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGT--GTTACCTTCAAATCCAT 168350 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| || | | |||||||| || ||||| ||||||||||| ||||| Sbjct 168351 CCATCTCAGTGAGCAGCTGATTAAGAGTCTGTTCTCTTTCATCATT---ACCTC------ 168401 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||||||||| ||||| || | || | | Sbjct 168402 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCCACAAAGACAATG 168460 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || |||| || | | | || ||| ||| | || | || | ||||| |||| || Sbjct 168461 CAAGGAGCGTTCTCTTTAGCTTTCTTGAAAAGA--TCACGGACTCTCGATGCACCAACAC 168518 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 | ||| |||| || ||||| |||||| |||| | | || | ||| | ||| ||||| Sbjct 168519 CCACAAACATCTCAACAAACTCAGAACCGGAGA-TGGAGAAGAAAGGCACACCAGCTTCA 168577 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | ||| |||||| ||| || || || || ||||| || || | ||||| Sbjct 168578 CCAGCAATGGCCTTCGCCAAAAGAGTTTTCCCCGTACCAGGAGGACCAATGAGGAGAACA 168637 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || || || | |||| ||| | | | | |||| || |||| | ||| || || Sbjct 168638 CCTTTCGGGATCCTTGCACCAACCGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCCACG 168697 Query 289300 ATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| | ||| || | ||||| |||||| ||| || || ||| |||| || Sbjct 168698 ACTTCCATGAAG-TCTTGCTTTGCTTCATCAACTCCAGCGACGTCATCAAACGT 168750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471689971336816