Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq161 574 5e-159 seq352 260 2e-64 seq17 138 1e-27 seq39 93.3 5e-14 seq842 82.4 8e-11 >seq161 Length=278270 Score = 574 bits (636), Expect = 5e-159 Identities = 707/966 (73%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666 ||||| || || | || ||||| || || ||||||| || || | ||| | ||||| Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 90879 Query 157667 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 157726 | ||| || |||| ||| | |||||||| || || || || || || || |||||| Sbjct 90878 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 90819 Query 157727 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 157786 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 90818 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACC 90759 Query 157787 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 157846 || || |||||| | || || || || ||||||||||| ||||| ||||||| ||| Sbjct 90758 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 90699 Query 157847 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCA 157906 || || ||||||||||||| |||| | || | ||||| | ||||| | | Sbjct 90698 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 90639 Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 || ||||| ||||| ||||||||| | |||| | |||||||| || ||||| ||| Sbjct 90638 TATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 90579 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| ||||| || || || || ||||||| ||| | |||| || | |||||| Sbjct 90578 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 90519 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086 || ||| || |||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 90518 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 90459 Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158146 ||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 90458 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 90399 Query 158147 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGT 158206 ||||| || || || || ||||||||| || | || ||||| | || | Sbjct 90398 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 90339 Query 158207 GAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACC 158266 ||||| || |||| || || || | ||||||| ||||||||||| ||||| || Sbjct 90338 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 90279 Query 158267 TATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158326 || ||||| || || || ||||| || || || || |||||||||||||| ||| ||| Sbjct 90278 TACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 90219 Query 158327 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 158386 |||||||||||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 90218 AACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 90159 Query 158387 ACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 158446 || || | || | ||| ||||| |||||||| || |||||||| |||||||| || Sbjct 90158 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 90099 Query 158447 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGT 158506 | ||||| |||| || ||||| | || || ||||| ||| | | ||||| ||| Sbjct 90098 GTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 90039 Query 158507 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 ||||||||||||||||||||||| ||||| || ||||| ||||| || ||||| |||||| Sbjct 90038 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGCT 89979 Query 158567 GCTGAG 158572 | |||| Sbjct 89978 GTTGAG 89973 Score = 511 bits (566), Expect = 5e-140 Identities = 719/1007 (71%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || ||||| |||||||| || |||||||| ||| | || || Sbjct 122094 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 122153 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 122154 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 122213 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || || | || ||||||||| | || ||| || ||| | || || || || Sbjct 122214 TATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 122273 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 122274 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 122333 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || |||| || ||||| ||| | || || ||||| |||||| || |||||||| Sbjct 122334 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGC 122393 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTAT 159664 || ||||| |||| ||||| ||| | ||||| |||||||| || || ||| | | | Sbjct 122394 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGATCTGTTCAAT-T 122452 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 122453 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 122512 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 || || ||| | ||||| || ||||||| || || || ||||| || || || || Sbjct 122513 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 122572 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||| ||||| | | || | ||||| ||||| || ||||| || || || || ||||| Sbjct 122573 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCGTTTCATAT 122632 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 ||||||||| || || |||| || | || || || | || || ||||| | |||||| Sbjct 122633 GATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGT 122692 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 ||| || || | | ||||||||| || |||||||| || || ||| | |||| Sbjct 122693 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 122752 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| || || ||||| || |||||||| || |||||||| ||||| || ||||| || Sbjct 122753 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 122812 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | || Sbjct 122813 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 122872 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||| || |||| | | || || ||| | || || ||||| || || || Sbjct 122873 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 122932 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204 ||| || || ||| | ||||| |||||||||||||||||||| ||||| || ||||| Sbjct 122933 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAA 122992 Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264 || || || |||||||| | ||||| ||| |||| || ||||| || |||||||| Sbjct 122993 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 123052 Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 123053 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 123099 >seq352 Length=147189 Score = 260 bits (288), Expect = 2e-64 Identities = 352/489 (72%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 158085 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158144 ||||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| | Sbjct 89328 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 89269 Query 158145 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC 158204 |||| || || || || || ||||||||| || | || |||| | | | || Sbjct 89268 TATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTA-TAGTTTGATC 89210 Query 158205 -GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAG 158263 | ||||| || |||| || || || | ||||||| ||||||||||| ||||| Sbjct 89209 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 89150 Query 158264 ACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158323 || || ||||| || || || ||||| || || || || |||||||||| | Sbjct 89149 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 89098 Query 158324 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 158383 ||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 89097 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 89039 Query 158384 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158443 || || || | || | ||| ||||| |||||||| || |||||||| |||||||| Sbjct 89038 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 88979 Query 158444 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158503 || | ||||| |||| | ||| | || || ||||| ||| | | ||||| ||| Sbjct 88978 TCAGTAGTTGATAGTCAAG----TGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 88923 Query 158504 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 158563 |||||||||||||||||||||| ||||| || ||||||||||| || || || ||| Sbjct 88922 AACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCT 88863 Query 158564 GCTGCTGAG 158572 |||| |||| Sbjct 88862 GCTGTTGAG 88854 >seq17 Length=826286 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || ||||| ||| | ||| | ||||||||| ||||||||| Sbjct 68759 TACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATCTGCCTTACTCTTGCCGTGCTGGT 68818 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| ||||| |||||| |||| |||||| ||||||| ||| ||| ||| Sbjct 68819 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 68878 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||||||||| | | |||||||||||| || |||| || ||||| || Sbjct 68879 TTCCTCGATGATGATCAGATCGGCGAAGGATTTGTTCTCACTTGTGCGGCTTATCCTACT 68938 Query 158930 TCTGAT 158935 |||||| Sbjct 68939 TCTGAT 68944 >seq39 Length=611640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || ||||| ||| | ||| | |||||| || ||||| || Sbjct 484129 TACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATTTGCCTTACTCATGCCGTGCCGGG 484070 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| || || || ||| | || |||| || |||| |||| || ||| Sbjct 484069 TCTTGCTCGAGCTGCGCCGGGAAAGTCGTCGCTGGCACCATTGACCAGACGGACCAGAGC 484010 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 |||||||||||||| ||||| | ||| | |||||| || ||||| || || || || Sbjct 484009 TTCTTAGACGATGACCAGATGAGCGAAGGGTATGTTCTCACCTGTGTCGCTTACCCGACC 483950 Query 158930 TCTGAT 158935 |||||| Sbjct 483949 TCTGAT 483944 >seq842 Length=174314 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158495 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTC 158554 ||||| ||| |||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 148246 AACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 148187 Query 158555 GACCTTGCTGCTGCTGAG 158572 || || ||||||| |||| Sbjct 148186 GATCTAGCTGCTGTTGAG 148169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548328007525760