Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq161 668 0.0 seq352 302 5e-77 seq17 98.7 1e-15 seq842 87.8 2e-12 seq652 82.4 8e-11 seq438 82.4 8e-11 >seq161 Length=278270 Score = 668 bits (740), Expect = 0.0 Identities = 749/997 (75%), Gaps = 6/997 (1%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| ||| | |||||||| || | || ||||| ||||| | Sbjct 90966 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 90907 Query 150898 GATGATTCCAACTCTGTTGGCAGCAAC--CATTTGCTTCATCGTGGCATTCATCGCTGCT 150955 |||||| || || | ||| | ||||| | || || || | |||||||| |||||| Sbjct 90906 GATGATCCCTACCTTATTGACCGCAACTTCCGTT--TTTATTATCGCATTCATTGCTGCT 90849 Query 150956 CCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAAC 151015 || || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||| Sbjct 90848 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 90789 Query 151016 AACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCC 151075 || || || || ||||| || ||||| | ||| ||||| ||| |||| || || || Sbjct 90788 AATATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCG 90729 Query 151076 ATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 151135 ||||||||||| || || | ||||||||||| |||||||||||||||| |||| || Sbjct 90728 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 90669 Query 151136 GTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 || | ||||| | ||||| | | ||| ||||||||||| |||||||| || | Sbjct 90668 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTC 90609 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254 || ||||||||||||| ||||| ||| |||||||| || ||||| ||||| ||||| | Sbjct 90608 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 90550 Query 151255 TGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGG 151314 ||| || ||| | |||| || | |||||||| ||| ||||||| ||||| || || Sbjct 90549 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 90490 Query 151315 TATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 151374 || ||||| || ||||||| ||| |||| ||||| || |||||||||||||| ||||| Sbjct 90489 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 90430 Query 151375 CCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCA 151434 ||| || || ||| | ||||| |||||||| ||||| || || || || || ||||| Sbjct 90429 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCA 90370 Query 151435 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTA 151494 ||||| |||| |||||| || || | || ||||| ||||| || || || | Sbjct 90369 TGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 90310 Query 151495 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTT 151554 ||||||| ||||||||||||||||| || |||||||| || ||||| || ||||| || Sbjct 90309 AGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTT 90250 Query 151555 TGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 151614 ||| || | ||||||||||| ||| |||||||| |||||||| | || |||||| | Sbjct 90249 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTT 90190 Query 151615 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATT 151674 || || ||||| || || ||||| ||||| ||||| | ||| | ||||| ||||| || Sbjct 90189 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTT 90130 Query 151675 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAA 151734 |||||| || |||||||| |||||||| || | | ||| |||| || || | || Sbjct 90129 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 90070 Query 151735 CACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 151794 || ||||| || || | |||||||| || ||||||||||||||||| || ||||| Sbjct 90069 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 90010 Query 151795 TGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 151831 ||||||||| |||||||| ||||| ||||||| |||| Sbjct 90009 TGCTCACAATTTCCCTCTAGACCTAGCTGCTGTTGAG 89973 Score = 645 bits (714), Expect = 4e-180 Identities = 753/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || ||||||||||| || ||||| ||||||||| | || || || ||| | Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 122261 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || |||||||||||||| || || | | | |||||| | || | || |||||| Sbjct 122262 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 122321 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 122322 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 122381 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || |||||||| |||||||| |||| ||||| ||| | || || |||||||| || || Sbjct 122382 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGA 122441 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 ||| || | | || || || ||||| || || ||||||||||| || ||||||||||| Sbjct 122442 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 122500 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | ||||| || || || || || |||||||| ||||||| || || || ||| || Sbjct 122501 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 122560 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 || || || || || |||||| | ||||| | ||||| || || || ||||||||||| Sbjct 122561 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 122620 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 ||||||||||||||||| || || || | |||| | ||| |||| | || ||||| Sbjct 122621 CCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 122680 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || Sbjct 122681 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 122740 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 122741 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 122800 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 122801 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 122860 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 ||| || | ||| | |||| | || ||||| | | ||||| ||| | || || || Sbjct 122861 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 122920 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 ||| || || || || || || |||||| | || | |||||||| ||||||||||| || Sbjct 122921 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 122980 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 |||||| || ||||| ||||| ||||||||| ||||||||||| |||| || || || Sbjct 122981 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 123040 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||||||| ||||| | ||||| || |||||||| Sbjct 123041 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 123094 >seq352 Length=147189 Score = 302 bits (334), Expect = 5e-77 Identities = 358/486 (74%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 151346 TTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTC 151405 ||||| || |||||||||||||| |||||||| || || ||| | ||||| |||||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 151406 TTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGT 151465 || || || || || || || ||||| ||||| |||| |||| | || | | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525 || ||||| ||||| || || || | ||||||| ||||||||||||||||| || Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585 |||||||| || || || || ||||| ||||| || | ||||||| ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 151586 AACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 151645 |||||||| ||||| | || |||||| | || || ||||| || || ||||| ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 151646 ACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 151705 ||||| | ||| | ||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 151706 ATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGT 151765 | | ||| |||| | || | || || ||||| || || | |||||||| Sbjct 88975 GTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 151766 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 151825 | ||||||||||||||||| || ||||||||||||||||||||||| || || |||||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 151826 GCTGAG 151831 | |||| Sbjct 88859 GTTGAG 88854 >seq17 Length=826286 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||| || | || || || |||||| ||| | ||| || |||||||| ||||||||| Sbjct 68759 TACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATCTGCCTTACTCTTGCCGTGCTGGT 68818 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 | || || ||||| ||||| ||||| ||| | ||||| ||| |||||| Sbjct 68819 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 68878 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||| | |||||||| ||||| | |||||| || || || |||| || ||||| ||| Sbjct 68879 TTCCTCGATGATGATCAGATCGGCGAAGGATTTGTTCTCACTTGTGCGGCTTATCCTACT 68938 Query 152184 TCTGATGTCACC 152195 |||||||| ||| Sbjct 68939 TCTGATGTTACC 68950 >seq842 Length=174314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 151769 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCT 151828 ||||||||||||||||| || ||||||||||||||||||||||| || || ||||||| | Sbjct 148231 GGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCTGTT 148172 Query 151829 GAG 151831 ||| Sbjct 148171 GAG 148169 >seq652 Length=103233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 151054 TATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAA 151113 ||| ||| |||| || || || ||||||||||| || || | |||||||| || ||||| Sbjct 31996 TATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGACTATACAA 31937 Query 151114 CGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGG 151173 ||||||||||| |||| |||| | || || | ||||| | | ||| ||||| Sbjct 31936 CGGTGGTCCTTATAAACTAATTGTTCTACATTTTTTACTTGGTGTAGCTTGTTATATGGG 31877 Query 151174 TCGTGAGTGG 151183 |||||| ||| Sbjct 31876 TCGTGAATGG 31867 >seq438 Length=150666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 151070 TATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAA 151129 || || ||||||||||| | | | ||||||||||| |||||||||||||||| || Sbjct 89508 TACCCGATCTGGGAAGCTGAATTCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAA 89449 Query 151130 CTCGTTGTCTTCCACTTCCTGATTG-GTATCTATGCTTACATGGGTCGTGAGTGGGAACT 151188 || |||| | ||||| | ||| ||| || || ||| ||||||||||| |||||||| Sbjct 89448 CTAATTGTTCTACACTTTTTACTTGTGTAGCT-TG-TTATATGGGTCGTGAATGGGAACT 89391 Query 151189 GTCTTACCGCTTGGGT 151204 || ||| ||||| Sbjct 89390 TAATTTCCGTCTGGGT 89375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549575901944960