Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq69 165 1e-34 seq4169 150 2e-30 seq146 150 2e-30 >seq69 Length=847923 Score = 165 bits (182), Expect = 1e-34 Identities = 220/298 (74%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || |||||||||||||| ||||||||||| ||||| || || | | |||| | ||||| Sbjct 356730 GAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGA 356671 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| ||||| ||||| ||||||||| Sbjct 356670 ACATCGGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAG 356611 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810 || || |||||||| ||||| ||||| |||||| ||||| |||| | |||||| || Sbjct 356610 AAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGA 356551 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | || | | | | || || || ||||| || ||||| | ||| || |||||||| |||| Sbjct 356550 CCGT-CCTGAGAT-AGATCGACTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTTGT 356493 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||| | || ||||| | || ||||| | ||| || | || |||||||| Sbjct 356492 ACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACA-TACAGAATCTGTCTGGGGTTG 356436 Score = 127 bits (140), Expect = 2e-23 Identities = 221/319 (69%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || ||||| ||| |||||| ||||| || || |||| |||||||| Sbjct 357324 GCCTTCTGGTAATCACCCACTCGCTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATT 357265 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| ||||| || | | ||| ||| || | || |||| | Sbjct 357264 AACTCCATCCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCC 357205 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || ||||| ||||| ||||||| ||| ||| | |||||| || | Sbjct 357204 AAAAGCCTATCCGCAACAAATTCGATATACTGGCTCATCAGGTCCCGGTTCATCCCCACC 357145 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| || |||| |||| ||||||||| |||||||||||||||| ||| || | Sbjct 357144 AACGCGCAGGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACG 357085 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| | || | || || ||||| |||| | | || ||||||| ||||| || Sbjct 357084 ATC-GACTTCACGCGCTCCTCCGAGAGCTTCGTCCTCAACAGAGTGTAGATGAGGCACGC 357026 Query 868990 AAAGTCGCAGTGCAACCCT 869008 || ||||||||||| ||| Sbjct 357025 GAAATCGCAGTGCAAGCCT 357007 >seq4169 Length=6310 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || |||||||||||||| || | | || Sbjct 3974 GCTTGGCCAATTCTCCGGGCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGA 3915 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||||| |||||||| | |||| | |||| | Sbjct 3914 TGGTGGACCTCTTGTTGTAGTGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGA 3855 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | |||| ||||||| || |||||||| Sbjct 3854 TGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGT 3795 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || ||||| ||||| ||| Sbjct 3794 GGACTTGTTTCAGCACTTTGTAAATG 3769 >seq146 Length=264749 Score = 150 bits (166), Expect = 2e-30 Identities = 202/277 (73%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || |||||||| ||||||||||| ||||| ||||| | |||| | ||||| Sbjct 121290 GAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGCCTCGGAGACTTGA 121349 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | || ||||| ||||| ||||| |||||||| Sbjct 121350 ACATCGGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCGTCAGATGCGGCGAAG 121409 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 ||||| ||||||||||||| ||||| || ||||||||| | || | |||||| | Sbjct 121410 AAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGTTTAGGGCTTTTTCCCAGTCG 121469 Query 869810 ACGGT--GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 |||| | | | | || || || || ||||||||||||| || || ||||| || | Sbjct 121470 -CGGTAATCCTGAGAT-AGATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTCT 121527 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||||||| | || |||| |||| ||||| Sbjct 121528 TGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAA 121564 Score = 102 bits (112), Expect = 1e-15 Identities = 191/274 (70%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| ||||||| || | ||| || ||||| | || || ||| Sbjct 121011 CCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACCTCGTTTC 121070 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||| || || | |||||| || || ||||| ||||| || |||||| || ||| Sbjct 121071 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAAGCGAAA 121130 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || || || || ||| | | ||| || || |||||| ||||||||||| Sbjct 121131 GCC-ACGATACGTTCAGCGAAGCTCT-GAGATCC-----GTCGATCCATTTCATCGCCCA 121183 Query 869359 GTCG-GCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 ||| ||| ||||| || | || | || ||||| ||||| ||||| || || | | Sbjct 121184 -TCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGAAGAGATGATCTCTCT 121242 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | ||| |||| ||||| |||| ||||| Sbjct 121243 CTTTGTTGTCTTTGATGTAGGTATCGAGAAGGAG 121276 Score = 86.0 bits (94), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || | | |||||| ||||| || || |||| ||||| ||||| |||||| Sbjct 120705 TACTCACCGACTCTCTTCTCGAAGAAGTTAGTTTTCCCCTGAAGCGAAATCAATTCCATC 120764 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||||| || | | ||| ||| || | || |||| | || | || Sbjct 120765 CAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAGTAACCGA 120824 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || || || ||||||||||| | ||| | | |||||| || | | ||| Sbjct 120825 TCCGCCACGAATTCGATGTACTGACTCATCAAATCACGGTTCATCCCAACCAACGCGCAA 120884 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || |||| |||| |||||||||| ||||||||||||| || || |||| Sbjct 120885 GGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACCGCATC-ACGA 120932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106583786225456