Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq49 107 2e-18 seq73 93.3 3e-14 seq986 89.7 4e-13 seq65 89.7 4e-13 seq252 86.0 5e-12 seq466 84.2 2e-11 >seq49 Length=794425 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| ||||||||||| || | ||||| |||||||| || | ||| |||| || | Sbjct 170238 ATGCAGATATTTGTCAAGACCCTTACCGGTAAAACCATAACATTGGAAGTGGAGAGCTCA 170179 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || ||| ||||||| ||||| ||||| | || |||||| Sbjct 170178 -GACACAATCGACAATGTTAAAGCGAAGATTCAAGACAAGGAAGGAATCCCTCCGGATCA 170120 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || || |||||||| ||||||| | || | || |||||||| Sbjct 170119 ACAGAGACTCATCTTCGCCGGCAAACAGCTAGAGGATGGTCGCACTCTTGCTGATTACAA 170060 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| || || || || ||| | ||| | ||||| Sbjct 170059 CATACAGAAGGAGTCAACGCTTCACCTTGTGTT 170027 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || ||||||||||| ||| | ||| ||| Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || |||||| || |||||||| | || ||||||| Sbjct 171090 GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCAA 171031 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||||||||| ||||||| | | || |||| |||||||| Sbjct 171030 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAAT 170971 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| || || || | ||| |||| Sbjct 170970 ATCCAAAAGGAGTCAACCCTTCACTTGGT 170942 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GCCTG 110330 ||||| || || ||||| ||| | || ||||||||||| || | ||| || || | Sbjct 170466 ATGCAGATCTTCGTCAAGACTCTTACAGGCAAAACCATAACATTGGAAGTTGAAAGCTCG 170407 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || ||| | | | | || || |||||| ||||| ||||| | || ||| | Sbjct 170406 --GACACTATTGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCTCCGGACC 170349 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || || |||||||| ||||||| |||| | || ||||||| Sbjct 170348 AGCAGAGACTCATATTCGCTGGCAAACAGCTAGAGGATGGTCGAACGCTTGCAGATTACA 170289 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| || |||||||| || ||||| ||||| | | ||| |||| || Sbjct 170288 ACATACAGAAAGAATCAACCTTGCATTTGGTGCTCCGTCTGAGAGGTGG 170240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || || |||||||| | || ||||||||||| ||| | ||| ||| || | Sbjct 170694 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCA 170635 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || ||| |||||| ||||| ||||| | || ||| || Sbjct 170634 -GACACAATCGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCA 170576 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || || |||||||| || |||| | | || | || |||||||| Sbjct 170575 ACAGAGACTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGCACTCTCGCTGATTACAA 170516 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| || || ||||| |||| | || || |||| || Sbjct 170515 TATCCAGAAAGAGTCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | || ||||||||||| ||| | ||| ||| Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || |||||| ||||| ||||| | || ||| || Sbjct 170862 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAG 170803 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | || || || ||||| || |||| | |||| | || |||||||| Sbjct 170802 CAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTACAAT 170743 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || ||||| |||| | || || |||| || Sbjct 170742 ATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170696 >seq73 Length=838620 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || ||||| ||||| || || | ||| || || || |||||| Sbjct 422935 GACAAAGAAGGTATACCACCAGATCAGCAAAGGCTGATATTTGCCGGGAAGCAACTGGAG 422994 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| |||||||||||||||| || ||||| ||||| | || |||| || Sbjct 422995 GATGGACGAACACTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 423054 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 423055 AGGCTCAGAGGTGGAA 423070 >seq986 Length=79754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || |||||||| ||| | || ||||| ||||| ||| | || || | || | Sbjct 27182 ATGCAGATCTTTGTCAACACTCTTACAGGCAAGACCATAACCCTTGAGGTCGAAAGCTTA 27241 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || |||||| ||||| ||||| | || || || Sbjct 27242 -GACACCATTGACGATGTCAAGACCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCA 27300 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| || || ||||||||||| ||||||| | || | | ||||||||| Sbjct 27301 GCAGAGACTTATCTACGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGAGGATTACAA 27360 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || |||||||| Sbjct 27361 CATTCAGAAGGAATCTAC 27378 >seq65 Length=625306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| || || ||||| ||||||||| | || |||| Sbjct 275808 ATGCAGATCTTCGTTAAAACCTTGACGGGCAAGACCATTACCCTGGAGGTGGAGAGCTCG 275867 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| |||||||||||| | || |||||| Sbjct 275868 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGATCAG 275927 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||| || || | ||||||| |||| || |||||| Sbjct 275928 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACATTGGCTGACTACAAC 275987 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || || ||||| | ||| ||||||| Sbjct 275988 ATCCAGAAGGAGTCTACACTTCACTTGGTGTT 276019 >seq252 Length=291119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || |||||||||||||| || || ||| | ||| ||| | Sbjct 179087 ATGCAGATTTTCGTGAAGACTTTAACCGGCAAGACGATCACCCTTGAAGTCGAGAGCTCC 179028 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| ||||| ||||| |||||| | || ||| || Sbjct 179027 GACACCATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 178968 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||| ||||||| | ||| |||| ||||||||| Sbjct 178967 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACAAC 178908 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | ||| ||||||| | ||||| || || Sbjct 178907 ATTCAGAAGGAGTCGACTCTTCACTTGGTGTTGCGTCTGCGTGGTGG 178861 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| || |||||||| || || || | || |||| Sbjct 179543 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAGACGATCACATTGGAGGTGGAGAGCTCG 179484 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| |||||| | || |||||| Sbjct 179483 GACACGATTGACAACGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCGGATCAG 179424 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | || | || || || ||||| ||||| | ||||||| |||| || |||||| Sbjct 179423 CAAAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGAACATTGGCCGACTACAAC 179364 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| || || ||||| | ||| ||||||| Sbjct 179363 ATTCAGAAGGAGTCTACACTTCACTTGGTGTT 179332 >seq466 Length=125450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| || | || ||||||||| ||||| || | ||| || ||||| || || Sbjct 78665 GACAAAGAGGGGATACCACCGGATCAACAGAGACTGATATTTGCTGGGAAACAACTAGAA 78606 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | || |||||||||||||||| || ||||| || || | ||| |||| || Sbjct 78605 GATGGTCGGACGCTGGCGGATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTCTTG 78546 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 78545 AGGCTCAGAGGTGGAA 78530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412807546760624