Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq69 199 6e-45 seq4169 188 1e-41 seq146 138 2e-26 seq114 100 5e-15 >seq69 Length=847923 Score = 199 bits (220), Expect = 6e-45 Identities = 241/327 (74%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| |||||| |||||| ||| || || |||||||| ||||| ||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || || | ||||| || || ||||| |||||||| |||||| ||| ||| Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| ||||| || ||||| | || || ||||||| ||||||||||| Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGATCCGTC------GATCCACGTCATCGCCCAC 356836 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || | || | || ||||| |||||||| || ||||| |||| Sbjct 356835 TGCGCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTCC 356776 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| ||||||| |||||| ||| |||| || |||||||| ||| Sbjct 356775 TTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCG 356716 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 356715 ATCGCGATCTGGAACCCGTAGAAAGCA 356689 Score = 145 bits (160), Expect = 1e-28 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| || || |||||| || || || ||||| ||||| ||| Sbjct 356685 GCCTCCGAGACTTGAACATCGGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCG 356626 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||||||||| ||||| ||||| |||||| ||||| |||| Sbjct 356625 TCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGTTGAGA 356566 Query 796270 GAGACCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||||| | ||||| | | | || ||||| ||||| || |||||||| || | Sbjct 356565 TTCTCCCAGTCGCGACCGTC-CTGAGAT-AGATCGACTTCCTCCGCCGTCCAAAACGATG 356508 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | |||||||| |||||||||||||| ||| || ||||| | || ||||||| Sbjct 356507 CTTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACA 356457 Score = 122 bits (134), Expect = 1e-21 Identities = 216/307 (70%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || ||||| ||| |||||| ||||| || || |||| |||||||| ||||||||| Sbjct 357315 TAATCACCCACTCGCTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATC 357256 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCG 794026 || ||||| || ||| ||| |||| || |||| |||| || ||| || | Sbjct 357255 CAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAAA-AGCCT 357197 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 || || || ||||| || ||||||| ||| ||| | |||||| || | | ||| Sbjct 357196 ATCCGCAACAAATTCGATATACTGGCTCATCAGGTCCCGGTTCATCCCCACCAACGCGCA 357137 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCT 794146 ||| |||| |||| |||||||| |||||||||||||||| ||| || |||| | || Sbjct 357136 GGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATC-GACT 357078 Query 794147 GGGCACG-TCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 794204 | || || ||| |||| ||| | | || ||||||| ||||| || || ||| Sbjct 357077 TCACGCGCTCCTCCGAGAGCTTCGTCCTC-AACAGAGTGTAGATGAGGCACGCGAAATCG 357019 Query 794205 CAATGCA 794211 || |||| Sbjct 357018 CAGTGCA 357012 >seq4169 Length=6310 Score = 188 bits (208), Expect = 1e-41 Identities = 190/245 (78%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || |||||||||||| |||||| ||| ||| ||| Sbjct 4013 TGTACTTGGTCACAGCCTTGGTGCCTTCAGAGACGGCGTGCTTGGCCAATTCTCCGGGCA 3954 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || || || |||||||||||||| || | | ||| ||| | |||||| ||| Sbjct 3953 GGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGATGGTGGACCTCTTGTTGTAGT 3894 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || |||| |||||||| | |||| | |||| |||||||| || |||||||| Sbjct 3893 GGGCG--AGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGATGTCGTTCACGAACGAGTT 3836 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| ||||||| || ||||||||| || || || ||||| || Sbjct 3835 CATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGGACTTGTTTCAGCACTTT 3776 Query 1485708 GTAAA 1485712 ||||| Sbjct 3775 GTAAA 3771 >seq146 Length=264749 Score = 138 bits (152), Expect = 2e-26 Identities = 228/325 (70%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||||||||||||| || ||| || ||||| | || || ||| Sbjct 121011 CCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACCTCGTTTC 121070 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||| || || | ||||| || || ||||| ||||| || |||||| || ||| Sbjct 121071 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAAGCGAAA 121130 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| |||| || || || || | | || || || |||||| ||||||||||| Sbjct 121131 GCC-ACGATACGTTCAGCGAAGCTCTG-AGATCC-----GTCGATCCATTTCATCGCCCA 121183 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| || |||| | || ||||| ||||| ||||| || || |||| Sbjct 121184 TCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGAAGAGATGATCTCTCTC 121243 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||| |||||| |||| ||||| ||| |||| ||||| || || || Sbjct 121244 TTTGTTGTCTTTGATGTAGGTATCGAGAAGGAGACTGTACATCTCGGAGTGAATATTCTC 121303 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 ||| ||||||||||| || || ||| Sbjct 121304 GATCGCGATCTGGAATCCGTAGAAG 121328 Score = 91.5 bits (100), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 793907 ATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 793966 |||||| || || | | |||||| ||||| || || |||| ||||| ||||| ||||| Sbjct 120704 ATACTCACCGACTCTCTTCTCGAAGAAGTTAGTTTTCCCCTGAAGCGAAATCAATTCCAT 120763 Query 793967 CCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCG 794026 ||| ||||| || | | ||| ||| || |||| |||| | || | || Sbjct 120764 CCAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAGTAACCG 120823 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 || || |||||||| |||||||| | ||| | | |||||| || | | ||| Sbjct 120824 ATCCGCCACGAATTCGATGTACTGACTCATCAAATCACGGTTCATCCCAACCAACGCGCA 120883 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || |||| |||| ||||||||| ||||||||||||| || || Sbjct 120884 AGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACCGCATC 120928 >seq114 Length=758912 Score = 100 bits (110), Expect = 5e-15 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||| ||||| ||||| ||||||||||| |||||| ||||||| ||| | Sbjct 408884 TTGGTGACGGCTTTGGTTCCCTCCGAGACGGCGTGTTTGGCCAATTCGCCGGGCAAAACG 408943 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT--GTTGCGCTTGTTAGTGCGCG 1485592 || || |||||||| ||||||||||||| | ||| || ||| ||| || || | Sbjct 408944 AGACGGACGGCGGTTTGGATCTCGCGGGAGGTGATGGTCGGTT--TCTTATTGTACCGAG 409001 Query 1485593 CCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 | || || | || | | | ||| |||| |||||||||| || ||||||| Sbjct 409002 CGAGACGCGACGATTCCTGAG-CGAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATG 409060 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||||| ||| || || || | || || || ||||| || | ||||||| Sbjct 409061 ATCCCCATCGCTTTCCCCGATATCCCGATATCTGGATGAACCTGTTTCAACACCTTG 409117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915526456971152