Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq49 120 2e-22 seq65 118 8e-22 seq252 109 4e-19 seq442 86.0 5e-12 seq986 84.2 2e-11 >seq49 Length=794425 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| ||||| | || ||||||||||| ||| | ||| ||| ||| | Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || |||||| ||||||||||| | || |||||| Sbjct 171090 -GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCA 171032 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || || | ||| ||||||||||| ||||| | | || |||| || ||||| Sbjct 171031 ACAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAA 170972 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||||||||| || | ||| |||| | || || |||| || Sbjct 170971 TATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | |||||||||||||| ||| | ||| ||| ||| | Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | || || ||||||| || || ||||| | || ||| || Sbjct 170862 -GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 170804 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||| || || | | ||| | || || ||||| Sbjct 170803 GCAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTACAA 170744 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || || || ||||| |||| | || ||| |||| || Sbjct 170743 TATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170696 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||| | |||||||| || || ||| |||| || ||| | Sbjct 171378 ATGCAGATCTTTGTTAAGACTCTTACAGGCAAGACGATAACCCTCGAGGTAGAAAGCTCG 171319 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| ||||||||||| | || || || Sbjct 171318 -GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCCGACCA 171260 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||||||||| ||||| | | ||| |||| || ||||| Sbjct 171259 GCAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGATGGCCGAACTCTGGCTGATTACAA 171200 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||| ||||| || | ||| |||| | || ||| |||| || Sbjct 171199 TATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTAGGTTGAGAGGTGG 171152 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||| | |||||||||||||| || | ||| || ||| | Sbjct 170466 ATGCAGATCTTCGTCAAGACTCTTACAGGCAAAACCATAACATTGGAAGTTGAAAGCTCG 170407 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || ||||||| || || ||||| | || ||| || Sbjct 170406 -GACACTATTGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCA 170348 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | || || |||||||| ||||| | ||| | || || ||||| Sbjct 170347 GCAGAGACTCATATTCGCTGGCAAACAGCTAGAGGATGGTCGAACGCTTGCAGATTACAA 170288 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || || || || ||||| ||||| Sbjct 170287 CATACAGAAAGAATCAACCTTGCATTTGGTG 170257 >seq65 Length=625306 Score = 118 bits (130), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || ||||| || || ||||| ||||||||| | || |||| ||| | Sbjct 275808 ATGCAGATCTTCGTTAAAACCTTGACGGGCAAGACCATTACCCTGGAGGTGGAGAGCTCG 275867 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| || ||||||||| | || |||||| Sbjct 275868 -GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGATCA 275926 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| || |||| |||| |||||||| Sbjct 275927 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACATTGGCTGACTACAA 275986 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || ||||||||||| | ||| |||||||| Sbjct 275987 CATCCAGAAGGAGTCTACACTTCACTTGGTGTTG 276020 >seq252 Length=291119 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || ||||| || || ||||| || || || | || |||| ||| | Sbjct 179543 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAGACGATCACATTGGAGGTGGAGAGCTCG 179484 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || |||||| | || |||||| Sbjct 179483 -GACACGATTGACAACGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCGGATCA 179425 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | || || || ||||| ||||||| || |||| |||| |||||||| Sbjct 179424 GCAAAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGAACATTGGCCGACTACAA 179365 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| ||||||||||| | ||| |||||||| Sbjct 179364 CATTCAGAAGGAGTCTACACTTCACTTGGTGTTG 179331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || |||||||| ||||| || || ||| | ||| ||| ||| Sbjct 179087 ATGCAGATTTTCGTGAAGACTTTAACCGGCAAGACGATCACCCTTGAAGTCGAGAGCTC- 179029 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || ||| ||||| || || |||||| | || ||| || Sbjct 179028 CGACACCATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCA 178969 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||| | ||| |||| || ||||| Sbjct 178968 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACAA 178909 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| |||||||| || | ||| |||||||| | |||| || || Sbjct 178908 CATTCAGAAGGAGTCGACTCTTCACTTGGTGTTGCGTCTGCGTGGTGG 178861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | || ||||| || ||||| |||| |||| ||| Sbjct 179315 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACGATTACACTCGAGGTGGAGAGCTCT 179256 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| ||||| |||||| | || |||||| Sbjct 179255 -GACACAATCGATAATGTCAAGGCCAAGATACAGGATAAGGAAGGCATTCCTCCGGATCA 179197 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||| | ||| |||| || ||||| Sbjct 179196 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACAA 179137 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||| || | ||| |||||||| | |||| || || Sbjct 179136 CATTCAAAAGGAGTCGACTCTCCACTTGGTGTTGCGTCTGCGTGGTGG 179089 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || ||||| || || ||||| ||||| ||| | || ||| ||| | Sbjct 179771 ATGCAGATTTTCGTTAAAACGTTGACGGGCAAGACCATCACCTTGGAGGTTGAGAGCTCG 179712 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| || || |||||| | || |||||| Sbjct 179711 -GACACAATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCA 179653 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||||| ||||||| || |||| |||| || ||||| Sbjct 179652 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGAACATTGGCTGATTACAA 179593 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | || ||||| Sbjct 179592 TATCCAGAAGGAGTCGACTCTTCATCTGGTG 179562 >seq442 Length=166222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| || || || || || ||||| || | ||| |||| ||| Sbjct 81102 ATGCAAATCTTCGTCAAGACGTTGACCGGAAAGACCATCACTTTGGAAGTGGAGAGCTC- 81160 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || || || || || ||||| | || |||||| Sbjct 81161 CGACACTATTGACAACGTGAAGGCTAAAATCCAGGACAAGGAAGGTATTCCTCCGGATCA 81220 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | || || || || || || |||| | ||| |||| |||||||| Sbjct 81221 GCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTTTGGCTGACTACAA 81280 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || ||||||||||| | ||| |||| ||| Sbjct 81281 CATCCAGAAGGAGTCTACACTTCACTTGGTCTTG 81314 >seq986 Length=79754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || |||||||| ||| | |||||||| ||||| ||| | || || | ||| Sbjct 27182 ATGCAGATCTTTGTCAACACTCTTACAGGCAAGACCATAACCCTTGAGGTCGAAAGCTTA 27241 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || ||||| | || || || Sbjct 27242 -GACACCATTGACGATGTCAAGACCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCA 27300 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| || || ||||||||||| ||||| | || | | ||| ||||| Sbjct 27301 GCAGAGACTTATCTACGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGAGGATTACAA 27360 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||| ||||| Sbjct 27361 CATTCAGAAGGAATCTAC 27378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398843898647152