Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq161 560 1e-154 seq352 237 2e-57 seq17 122 1e-22 >seq161 Length=278270 Score = 560 bits (620), Expect = 1e-154 Identities = 728/1004 (73%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 122092 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 122151 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 122152 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 122211 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128 |||| || ||||| | || ||||||||| | |||||| || ||| | || || || | Sbjct 122212 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 122271 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 122272 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 122331 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 | || |||| || ||||| ||| | || || |||||| ||| || |||||||||| Sbjct 122332 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 122391 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307 | || ||||| |||| || || ||| | ||||| |||||||| || || ||| || | Sbjct 122392 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGATCTGTTCAAT 122451 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 | || ||||| ||||| || || || ||||||| ||||| || || ||| ||| || Sbjct 122452 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 122510 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427 || || || ||||| || ||||| |||||||||||||||| |||||||| ||||| Sbjct 122511 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 122570 Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487 || ||| ||||| | || || || ||||| || || || |||||| | ||||| ||||| Sbjct 122571 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCGTTTCAT 122630 Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547 ||||||||||| || || | ||||| | |||||||| | ||||||||||| | ||| Sbjct 122631 ATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 122690 Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607 ||||| ||||| || | ||||||||| || ||||| ||||| || || || | Sbjct 122691 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 122750 Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 122751 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 122810 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 122811 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 122870 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | | || |||| | | || |||||| | || || ||||| ||||| Sbjct 122871 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 122930 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || || || || ||| | ||||| |||||||| || || ||||| |||||||| || Sbjct 122931 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAA 122990 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || |||||| | || ||||| | ||||||||| |||| || ||||| || |||||| Sbjct 122991 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 123050 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| | || ||||| || || || ||||| |||| ||||| || Sbjct 123051 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 123094 Score = 536 bits (594), Expect = 1e-147 Identities = 702/968 (73%), Gaps = 3/968 (0%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 90879 Query 177645 ATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAA 177704 | || || |||| ||| | |||||||| || || || || || || || |||||| Sbjct 90878 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 90819 Query 177705 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 177764 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 90818 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACC 90759 Query 177765 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 177824 || || |||||| | || || || || ||||||||||| ||||| ||||||| ||| Sbjct 90758 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 90699 Query 177825 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCA 177884 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 90698 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 90639 Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 |||||||| ||||| ||||||||| | |||||| |||||||| || ||||| |||| Sbjct 90638 TATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 90579 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || ||||||||||| || | || || ||||| | |||| || | ||||| Sbjct 90578 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCA 90520 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 ||| || || |||| ||||||||| || |||||||||||||| |||| ||| |||| Sbjct 90519 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 90460 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123 |||||| || || ||||| || ||||||||||| || |||||| | ||||| ||||| || Sbjct 90459 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 90400 Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCG 178183 |||||| || || || || |||||||||||| | || |||||| | | | Sbjct 90399 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 90340 Query 178184 TGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 178243 || || ||||||| ||| || || | ||||||| ||||| |||||||||||||| Sbjct 90339 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 90280 Query 178244 ATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTT 178303 || ||||| || || || |||||||| || || || ||||||||||||||||| || Sbjct 90279 TTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 90220 Query 178304 CAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178363 ||||||||||||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 90219 CAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 90160 Query 178364 CACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178423 || || | ||| | ||| ||||| || ||||| ||||| ||||| |||||||| || Sbjct 90159 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 90100 Query 178424 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178483 | | || | ||||||||||| | || || ||||| || | | |||||||| Sbjct 90099 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 90040 Query 178484 TCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAG 178543 || || |||||||| ||||| ||| | ||| || || || ||||| || || || || | Sbjct 90039 CCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCACAATTTCCCTCTAGACCTAGCTG 89981 Query 178544 CAGCTGAG 178551 | | |||| Sbjct 89980 CTGTTGAG 89973 >seq352 Length=147189 Score = 237 bits (262), Expect = 2e-57 Identities = 346/489 (71%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122 ||||||| || || ||||| || ||||||||||| || |||||| | ||||| ||||| | Sbjct 89328 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 89269 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 |||| || || || || || |||||||||||| | || |||| | | || Sbjct 89268 TATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCA 89209 Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 | || || ||||||| ||| || || | ||||||| ||||| ||||||||||||| Sbjct 89208 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAA 89149 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | || ||||| || || || |||||||| || || || |||||||||| | Sbjct 89148 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTT 89098 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGT 178362 ||||||| || ||||| | || |||||| | || || ||||| ||||| || || |||| Sbjct 89097 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 89038 Query 178363 TCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGT 178422 | || || | ||| | ||| ||||| || ||||| ||||| ||||| |||||||| | Sbjct 89037 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 88978 Query 178423 CCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCG 178482 | | | || | ||| |||| | || || ||||| || | | |||||||| Sbjct 88977 CAGTAGTTGATAGTCAA----GTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 178483 GTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCA 178542 | || |||||||| ||||| ||| | ||| || || |||||||| || ||||| || Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCACAACTTCCCTCTAGATCTAGCT 88863 Query 178543 GCAGCTGAG 178551 || | |||| Sbjct 88862 GCTGTTGAG 88854 >seq17 Length=826286 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || || || || ||||| || || ||||| || ||||| || ||||||||| Sbjct 68759 TACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATCTGCCTTACTCTTGCCGTGCTGGT 68818 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 68819 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 68878 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| |||||||| || || | | ||||||| | | ||||| | || || || || Sbjct 68879 TTCCTCGATGATGATCAGATCGGCGAAGGATTTGTTCTCACTTGTGCGGCTTATCCTACT 68938 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752 || ||| || ||||| || | ||||| || || Sbjct 68939 TCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 68973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605615960554880