Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq65 114 8e-21 seq70 107 1e-18 seq187 102 5e-17 seq252 98.7 7e-16 seq73 98.7 7e-16 seq69 96.9 2e-15 seq442 87.8 1e-12 seq49 86.0 4e-12 >seq65 Length=625306 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| || || ||| || || |||||||| |||| Sbjct 412916 CACCACCACGGAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 412975 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| |||| ||||| || || |||||||| |||||||| || ||| Sbjct 412976 CGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCCGCGAAAATCAATCGCTGCTGGTCCGGCG 413035 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||| | ||| ||| | |||||| ||||| Sbjct 413036 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCAGAGGATTCG 413094 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || || | ||||| || ||||||||||| Sbjct 413095 ACCTCAAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 413144 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || ||||||||||||| | ||| | |||| ||| Sbjct 275560 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAATGTTCTGCCGTCTTCC 275501 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || |||||||| || || | | ||||||||| | || | || || || || Sbjct 275500 AACTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTATCCTGG 275441 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || ||| | ||| | ||||| ||| |||||| |||| |||||||| Sbjct 275440 ATCTT-GGCTTTAACGTTGTCGATCGTGTCAGAGCT---TTCCACCTCAAGGGTGATCGT 275385 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | || || || ||||||||||| Sbjct 275384 TTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 275352 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || || || ||| || || |||||||| || | Sbjct 276035 ACCACCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGC 275976 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | |||| || | || |||||||| || |||| | ||||||||| | || Sbjct 275975 CAATGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGG 275916 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | ||||||||||| || || ||| || | ||| | |||||| | | | ||| Sbjct 275915 AATGCCTTCTTTGTCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTC-CGAGCTCTCC 275858 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || || || || || ||||| || |||||||||||| Sbjct 275857 ACCTCCAGGGTAATGGTCTTGCCCGTCAAGGTTTTAACGAAGATCTGCATA 275807 >seq70 Length=414679 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||||| || || || ||| || || |||||||| || | | Sbjct 19320 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 19379 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | |||| |||| || || ||||| || |||| |||||||||||| |||| Sbjct 19380 AGAGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 19439 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| ||| | || || ||||| || Sbjct 19440 ATCCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTATCCGACGATTCAAC 19498 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 19499 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 19546 >seq187 Length=227058 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| |||||| |||| || | || || ||||| || Sbjct 169714 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAA 169773 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || | || | ||||| ||||| || ||| || | ||| Sbjct 169774 AATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTGA-CAT 169832 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || |||| ||||| || || || || | ||||| | Sbjct 169833 TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTCTTCCCCGTCAGGGTTTTCA 169892 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 169893 CGAAGATCTGCAT 169905 >seq252 Length=291119 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| |||||||| || ||||| ||| || || ||||||||||||| Sbjct 178860 ACCACCACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGC 178919 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || ||||| || || || | ||||||||| || | || Sbjct 178920 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 178979 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| | || | ||||||| || || Sbjct 178980 GATGCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGAC 179039 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| |||||||| || || ||||| || || || || ||||||||| Sbjct 179040 TTCAAGGGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCATA 179088 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| |||||||| || ||||| ||| ||||| ||||||||||||| Sbjct 179088 ACCACCACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGC 179147 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || |||||||| || || | |||||||||||| | || Sbjct 179148 CAATGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 179207 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| || || || || | | |||| || | ||||| ||| | Sbjct 179208 AATGCCTTCCTTATCCTGTATCTT-GGCCTTGACATTATCGATTGTGTCAGAGCT---CT 179263 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || ||||| || || || | || || ||||||||||||||| Sbjct 179264 CCACCTCGAGTGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATA 179316 >seq73 Length=838620 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | | || |||| ||| ||||| |||||| || ||||||||||| | Sbjct 423068 CCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCC 423009 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| ||| | || |||| ||| || |||||||| |||| | ||||||||| | || Sbjct 423008 AGTGTTCGTCCATCCTCCAGTTGCTTCCCGGCAAATATCAGCCTTTGCTGATCTGGTGGT 422949 Query 33643 ACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 422948 ATACCTTCTTTGTC 422935 >seq69 Length=847923 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || || || || |||||||| |||| |||||| || | || ||| Sbjct 38643 ACCAAATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCATCTTCC 38584 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||||||| || |||| ||||||||||| |||| | ||||| ||||| Sbjct 38583 AGTTGTTTTCCGGCGAAGATCAGCCGCTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGG 38524 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| |||| ||| | ||||| |||||| || || | || || || || Sbjct 38523 ATCTTAGCTTTC-ACATTGTCGATCGTGTCCGATGATTCAACCTCGAGTGTTATTGTCTT 38465 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | | || || || || |||||||| Sbjct 38464 CCCCGCAAGAGTCTTCACGAAAATCTGCAT 38435 >seq442 Length=166222 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| || || ||| || || |||||||| || | || || || |||| || Sbjct 81083 CACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCGTCCTC 81024 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||| |||||||| || ||||| | |||||| || | || | |||||| ||||| Sbjct 81023 GAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTG 80964 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | | | ||| | ||||||| ||||| || | |||||||| | Sbjct 80963 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATCGTCT 80905 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||||| ||||| || |||||||||||| Sbjct 80904 TTCCTGTTAGGGTTTTGACGAAGATCTGCATA 80873 >seq49 Length=794425 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||||||| | || ||||| |||||||||||||| | Sbjct 170239 ACCACCTCTCAGACGGAGCACCAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCTGC 170298 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||| || || || || | | |||||| || | || Sbjct 170299 AAGCGTTCGACCATCCTCTAGCTGTTTGCCAGCGAATATGAGTCTCTGCTGGTCCGGAGG 170358 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || || | |||| ||| | ||||| ||| || Sbjct 170359 GATCCCTTCCTTGTCTTGAATCTT-TGCCTTGACATTGTCAATAGTGTCCGAGCT---TT 170414 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||| ||||| | || || || |||||||||||| Sbjct 170415 CAACTTCCAATGTTATGGTTTTGCCTGTAAGAGTCTTGACGAAGATCTGCATA 170467 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||| | || || || ||| || |||||||||||||| | Sbjct 170012 CCACCACGAAGACGCAACACAAGGTGAAGCGTTGACTCCTTCTGTATGTTGTAATCAGCA 170071 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||||| ||||| || || | | ||| ||||| | || Sbjct 170072 AGAGTGCGACCATCCTCTAGCTGTTTGCCGGCGAAGATGAGTCTCTGTTGATCCGGAGGG 170131 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| ||| ||| | || ||||| ||| | ||||| ||| || Sbjct 170132 ATTCCTTCCTTGTCTTGAATCTTC-GCTTTAACATTGTCGATTGTGTCTGAGCT---CTC 170187 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || || |||||||| || | || || ||||| ||||||||| Sbjct 170188 CACTTCCAATGTTATGGTTTTACCGGTAAGGGTCTTGACAAATATCTGCATA 170239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328676886850560