Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq161 589 6e-164 seq352 293 7e-75 seq2526 96.9 1e-15 >seq161 Length=278270 Score = 589 bits (652), Expect = 6e-164 Identities = 713/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 90880 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | || ||||| ||||||||||| ||||| ||||| || |||||||| || || || Sbjct 90879 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 90820 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || |||||||| |||||||| || || || || ||| | |||| | Sbjct 90819 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 90760 Query 19711 CA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 90759 CTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 90702 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| |||||||| || || | |||| | || | ||||| | |||| | | Sbjct 90701 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 90642 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| || || ||||||||||| | || || || ||| | ||||||||| | Sbjct 90641 TGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 90582 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | ||||||| |||| Sbjct 90581 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGG 90523 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || || || |||| ||||||| | || ||||| ||||| ||||||| ||| | Sbjct 90522 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 90463 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || |||||||| |||||||| || |||||| | ||||| ||||| Sbjct 90462 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 90403 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || ||||| ||||| ||||| ||||| |||| || | || | ||| Sbjct 90402 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 90344 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| || || |||||||||| Sbjct 90343 TTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAG 90284 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || || ||||| ||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 90283 AAACTTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 90224 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 ||||||||| ||||||| |||| |||||| | || || |||||||| ||||| |||| Sbjct 90223 GTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 90164 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 |||| |||| || || || || ||||| || || || || |||||||| || |||| Sbjct 90163 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 90104 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | || ||||| ||| ||||||||||||| ||| | || |||| Sbjct 90103 AATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTG 90044 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| |||||||| || ||||| || ||||| | Sbjct 90043 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAG 89984 Query 20487 C 20487 | Sbjct 89983 C 89983 >seq352 Length=147189 Score = 293 bits (324), Expect = 7e-75 Identities = 371/505 (73%), Gaps = 20/505 (4%) Strand=Plus/Minus Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||||| | ||| ||| | ||||||| || || || |||||||| |||||||| Sbjct 89350 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 89294 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | ||||| ||||||||||| || || || ||||| ||||| ||||| ||| Sbjct 89293 TTTCACATGTTAGGTGTAGCTGGTGTATTTGGCGGCTCCCTATTTAGTGCTATGCATGGT 89234 Query 20105 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 || |||| || | | | ||| | | || || || ||| | ||| | || | || Sbjct 89233 TC-CTTGGTAACTTATAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 89175 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 89174 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 89115 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || |||||||||| |||||||||| |||||| |||| |||||| | || Sbjct 89114 CCGATTGATCTTCC---------GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 89064 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 || |||||||| ||||| |||||||| |||| || || || || ||||| || || Sbjct 89063 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 89004 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA-ACAATGGTCGTGTCATTGATA 20402 || || |||||||| || ||||| || | | || | ||| |||| ||| ||| Sbjct 89003 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-----GTGTTATTAATA 88949 Query 20403 CTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATG 20462 |||||||||| ||| | || |||||||| | || | || || ||||||||||| |||| Sbjct 88948 CTTGGGCTGATATTATTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATG 88889 Query 20463 CTCATAACTTCCCACTTGACCTTGC 20487 |||| |||||||| || || || || Sbjct 88888 CTCACAACTTCCCTCTAGATCTAGC 88864 >seq2526 Length=25980 Score = 96.9 bits (106), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||||| | ||| ||| | ||||||| || || || |||||||| |||||||| Sbjct 23969 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 23913 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCAC 20101 || |||||| | ||||| ||||||||||| || || || ||||| ||||| |||||| Sbjct 23912 TTTCACATGTTAGGTGTAGCTGGTGTATTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 96.9 bits (106), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||||| | ||| ||| | ||||||| || || || |||||||| |||||||| Sbjct 24260 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 24204 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCAC 20101 || |||||| | ||||| ||||||||||| || || || ||||| ||||| |||||| Sbjct 24203 TTTCACATGTTAGGTGTAGCTGGTGTATTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148816838629344