Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq161 551 2e-152 seq352 280 4e-71 seq2526 86.0 2e-12 >seq161 Length=278270 Score = 551 bits (610), Expect = 2e-152 Identities = 703/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 90880 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 90879 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 90820 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| || |||||||| || || || || ||| | | || | Sbjct 90819 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 90760 Query 28839 CA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 90759 CTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 90702 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 90701 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 90642 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || || ||||||||||| | || || || ||| | || |||||| | Sbjct 90641 TGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 90582 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||||||| | ||| Sbjct 90581 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 90522 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 90521 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 90462 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || |||||| | || || ||||| Sbjct 90461 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 90402 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-T 29255 || ||||| || || ||||||||||| ||||| ||||| | || || || | | ||| | Sbjct 90401 GTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 90343 Query 29256 GCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 90342 TAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGA 90283 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 90282 AACTTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 90223 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| || ||||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 90222 TTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 90163 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || || ||||| || || || || ||||| || || ||||| Sbjct 90162 GTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 90103 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || ||||| |||||||||||||||||| || | || || || Sbjct 90102 ATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 90043 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| || ||||| || || || || Sbjct 90042 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGC 89983 Query 29616 T 29616 | Sbjct 89982 T 89982 >seq352 Length=147189 Score = 280 bits (310), Expect = 4e-71 Identities = 351/479 (73%), Gaps = 17/479 (4%) Strand=Plus/Minus Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 ||||| || || || |||||||| |||||||| || |||||| | || || ||||| || Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-G 29258 || || ||||| ||||||||||| ||||| ||||| | || || | | | ||| | | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTA-TAGTTTGATCAG 89208 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 || || || ||| | ||| || | ||||||| || || ||||||||||| || Sbjct 89207 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 89148 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 ||| ||||| ||||| ||||| ||||| ||||| || |||||||||| ||| Sbjct 89147 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------TTT 89097 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 ||| ||| |||||| |||| |||||| | || || |||||||| ||||| |||||||| Sbjct 89096 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 89037 Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 |||| || || || || ||||| || || || || ||||| || || ||||| || Sbjct 89036 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 88977 Query 29499 GCTTCTCGACAA-CAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTA 29557 | | || | ||| |||| |||||||||||||||||| || | || || |||| Sbjct 88976 AGTAGTTGATAGTCAA-----GTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 29558 ACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || | || | ||||| |||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCT 88863 >seq2526 Length=25980 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 ||||| || || || |||||||| |||||||| || |||||| | || || ||||| || Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCAC 29229 || || ||||| ||||||||||| |||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 ||||| || || || |||||||| |||||||| || |||||| | || || ||||| || Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCAC 29229 || || ||||| ||||||||||| |||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146653812485728