Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq161 609 7e-170 seq352 316 6e-82 seq2526 105 2e-18 >seq161 Length=278270 Score = 609 bits (674), Expect = 7e-170 Identities = 728/981 (74%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | || ||| | || ||| ||| ||||| || ||||||||||| || Sbjct 90905 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||||||||| |||||||| Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 90787 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAGCA--GCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||| | | ||| || || || | || || ||||| Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCTGCA--GCTATTGGTTTGCATTTTTACCCG 90729 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || ||||||||| || ||||||||||||| |||||||| || || | |||| | Sbjct 90728 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 90669 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | ||||| | |||| || | ||| ||||| || || ||||||||||| | Sbjct 90668 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTC 90609 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||| ||||||||| |||||| || |||||||||||||| || || || Sbjct 90608 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 90549 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||| ||| |||||||||| ||| || | ||||||| | || Sbjct 90548 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 90489 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||||| ||| |||||||||||||||| || ||||| || |||||| Sbjct 90488 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 90429 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || || |||||| | ||||| |||||||| |||||||| || ||||||||||| ||||| Sbjct 90428 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCAT 90369 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || | Sbjct 90368 GGTTC-CTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 90310 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| || || ||||||||||| ||||| |||||||| || |||||||| ||||| Sbjct 90309 AGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTT 90250 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | || ||||| || || |||||||| ||||||| |||||||||| || Sbjct 90249 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTT 90190 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 || |||||||| || || || ||||||||| | || | || | ||||| ||||| || Sbjct 90189 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTT 90130 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619 |||| | ||||| || || || ||||| || | |||| | | || ||||| ||| | Sbjct 90129 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 90070 Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 |||||||||||| ||| | || ||||||||||| || | || || ||||| |||||||| Sbjct 90069 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 90010 Query 19680 TGCTCATAACTTCCCACTTGA 19700 |||||| || ||||| || || Sbjct 90009 TGCTCACAATTTCCCTCTAGA 89989 >seq352 Length=147189 Score = 316 bits (350), Expect = 6e-82 Identities = 376/503 (75%), Gaps = 20/503 (4%) Strand=Plus/Minus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||||| | ||| ||| || |||||||||||| || ||||| || |||||||| || Sbjct 89347 GGTACGTGCTTCTA-ATGATT--ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTT 89291 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 |||||| | ||||| |||||||| || ||||| || ||||||||||| ||||| ||||| Sbjct 89290 CACATGTTAGGTGTAGCTGGTGTATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTC- 89232 Query 19327 CTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | | | ||| | | ||||| || ||| | | |||| || | || || Sbjct 89231 CTTGGTAACTTATAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 89172 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 || || || ||||||||||| ||||| |||||||| ||||||||||| |||||||| || Sbjct 89171 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCG 89112 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 | || |||| || ||||||||| |||||| |||||||||| || || || Sbjct 89111 ATTGATCTTCC-GT--------TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 89061 Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565 |||||| || || || ||||||||| | || | || | ||||| ||||| |||||| | Sbjct 89060 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCT 89001 Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAATGGTCGTGTCATTGATACTT 19624 ||||| || || || ||||| || | |||| | ||| |||| ||| |||||| Sbjct 89000 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-----GTGTTATTAATACTT 88946 Query 19625 GGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTC 19684 ||||||| ||| | || ||||||||| | || | || || ||||| ||||||||||||| Sbjct 88945 GGGCTGATATTATTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTC 88886 Query 19685 ATAACTTCCCACTTGATTTGGCT 19707 | |||||||| || ||| | ||| Sbjct 88885 ACAACTTCCCTCTAGATCTAGCT 88863 >seq2526 Length=25980 Score = 105 bits (116), Expect = 2e-18 Identities = 93/114 (82%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||||| | ||| ||| || |||||||||||| || ||||| || |||||||| || Sbjct 23966 GGTACGTGCTTCTA-ATGATT--ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTT 23910 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 |||||| | ||||| |||||||| || ||||| || ||||||||||| |||||| Sbjct 23909 CACATGTTAGGTGTAGCTGGTGTATTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 105 bits (116), Expect = 2e-18 Identities = 93/114 (82%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||||| | ||| ||| || |||||||||||| || ||||| || |||||||| || Sbjct 24257 GGTACGTGCTTCTA-ATGATT--ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTT 24201 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 |||||| | ||||| |||||||| || ||||| || ||||||||||| |||||| Sbjct 24200 CACATGTTAGGTGTAGCTGGTGTATTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141137455870944