Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq49 109 5e-19 seq252 98.7 9e-16 seq69 95.1 1e-14 seq65 82.4 7e-11 >seq49 Length=794425 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||||| ||||| || ||||| || || ||||| ||| || Sbjct 170941 AACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCCAAAGTACGGCCATCCTC 171000 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||||||||| | |||| || | ||||||||| ||||| || ||||||||||| Sbjct 171001 GAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCCGGAGGGATTCCTTCTTTATCCTG 171060 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | ||||| | ||| ||||| | || | ||||| Sbjct 171061 AATCTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACTTCTAGGGTGATGGTTTT 171120 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | ||||| ||||| Sbjct 171121 GCCAGTGAGGGTTTTAACAAAAATTTGCAT 171150 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||||||||||| || ||||| || || || || ||| || Sbjct 171169 AACCAAGTGAAGGGTTGACTCTTTTTGGATATTGTAATCAGCCAGAGTTCGGCCATCCTC 171228 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||||||||| | |||| || | ||| || || ||||| || ||||||||||| Sbjct 171229 GAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATTCCTTCTTTATC 171285 >seq252 Length=291119 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | ||||| |||||||||||||| ||| || || Sbjct 179094 ACGCAGACGCAACACCAAGTGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCCAATGT 179153 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| |||| |||||||| ||||| ||||| ||||| Sbjct 179154 GCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCC 179213 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| || || || | | || | || || | |||||| |||| Sbjct 179214 TTCCTTATCCTGTATCTTGGCCTTGACATTATCGATTGTGTCAGAGCTCTCCACCTCGAG 179273 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||| || || || | || |||||||| Sbjct 179274 TGTAATCGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 179315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | ||||| || ||||||||||| ||| || || Sbjct 178866 ACGCAGACGCAACACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGT 178925 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || || | |||| |||||||| || || ||||| ||||| Sbjct 178926 GCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCC 178985 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || ||| | | || | || |||| ||| ||||| | Sbjct 178986 TTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCGACTTCAAG 179045 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || | ||| || | |||||||||||| Sbjct 179046 GGTGATCGTCTTGCCGGTTAAAGTCTTCACGAAAATCTGCAT 179087 >seq69 Length=847923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 540/832 (65%), Gaps = 55/832 (7%) Strand=Plus/Plus Query 46461 TGGAAGGTGGAGGAGGTGGATCTGTCTAGGGACTATGACGACTTTGAGTCTAAATTAAAC 46520 |||| || |||||| || ||||| ||| |||| | ||||| ||| || | ||| Sbjct 356516 TGGACGGCGGAGGAAGTCGATCTATCTCAGGACGGTCGCGACTGGGAG---AATCTCAAC 356572 Query 46521 GATGACGAACGTTACTTTATCAAGCACGTGTTGGCGTTCTTTGCCGCCGCCGATAGCATC 46580 || | ||| || |||| ||||| ||||| | || ||||| |||||| | || | ||| Sbjct 356573 GACGGCGAGCGGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATC 356632 Query 46581 GT----GAATATTAACCTCATCGATTACATG-CAGCAAAAAGTTCCGGAATTGGAAGCGC 46635 || || || || |||||| |||| | | | |||| | | ||| |||| Sbjct 356633 GTTCTGGAGAATCTCGCTTCTCGATT-CATGTCCG----ATGTTCAAGTCTCGGAGGCGC 356687 Query 46636 AGTATTTTTACAACCTTCAAGTGCTC-ATCGAGTGCGTACACACTGAGATGTATAGTCTG 46694 ||| ||| ||| || | | |||||| | | || | |||||||| ||||| Sbjct 356688 GTGCTTTCTACGGG-TTCCAGATCGCGATCGAGAACATCCATTCCGAGATGTACAGTCTC 356746 Query 46695 CTCATAGAACAATTG-ATTAGAGACGAGCACGAGCGCGACACGTTGCTGAATGCGTTCGA 46753 ||| | || || || || | ||| | | ||| | ||| || | || |||| Sbjct 356747 CTCCTCGA-CACTTACATCAAGGACAACAAGGAGAGAGACCATCTGTTTCGCGCAATCGA 356805 Query 46754 GCACGTGCCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGA 46812 | | || ||||| ||| || ||||| |||||||| |||| ||||||||| || Sbjct 356806 AACCATCCCTTGCGT-CGCGAAGAAGGCGCAGTGGGCGATGACGTGGATCGA---CGGAT 356861 Query 46813 CCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG 46872 || || | || ||||| || || || ||||| ||||||||| | || || || | Sbjct 356862 CCCAGACTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCG 356921 Query 46873 GCAGTTTTGCCGCCATTTTTTACATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTC 46931 | || || | | ||||| | | || || | ||| | |||||||| || || ||| Sbjct 356922 GTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCGGGC-TCATGCCGGGACTAACCTTC 356980 Query 46932 AGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTAC 46991 |||||||||||||| || |||||||| | ||| || || ||||| ||| || | Sbjct 356981 TCCAACGAGTTGATCTCTCGAGACGAAGGCTTGCACTGCGATTTCGCGTGCCTC-AT--C 357037 Query 46992 AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGA---GCATGTTTAGGGAG 47048 | || | ||| ||| | |||||| | | ||| || | | || Sbjct 357038 TACACTCTGTTGAGGACGAAGCT---CTCGGAGGAGCGCGTGAAGTCGATCGTCTGCGAC 357094 Query 47049 GCGGT-GAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGC 47105 || || ||| ||||| | ||||||| | |||| ||||| ||| ||| ||| |||| Sbjct 357095 GCCGTCGAG-ATCGAGAGGGAGTTTGT--GTGCGACGCGCTTCCCTGCGCGTTGGTGGGG 357151 Query 47106 ATGAAC--GCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTT-GGT 47161 |||||| | || || ||| || | ||||| || ||||| |||||| | || || ||| Sbjct 357152 ATGAACCGGGAC---CTGATGAGCCAGTATATCGAATTTGTTGCGGATAGGCTTTTGGGT 357208 Query 47162 GCAGCTCGGACAACCGAAATATTTTAATGCT----CGTAATCCGTTTGAGTTTATGAACA 47217 || ||| || || | || | | | | | || ||||||||||| | ||| | Sbjct 357209 GC-GCTTGG-GTACGGGAAGGTGT--ACGGTGTGGCG-AATCCGTTTGATTGGATGGAGT 357263 Query 47218 ACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || ||||| |||| ||||| || || |||||||| ||||| || || || Sbjct 357264 TAATCTCGCTTCAGGGTAAAACAAACTTCTTCGAGAAGCGAGTGGGTGATTA 357315 >seq65 Length=625306 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||| || ||||||||||| || || ||| || ||| || Sbjct 276245 AACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCCTC 276186 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | |||| |||||||| || || ||||| || || |||||||| Sbjct 276185 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTG 276126 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || |||| | || | || || | |||||| |||| || | ||| || Sbjct 276125 AATCTTGGCCTTCACGTTATCGATTGTGTCAGAGCTCTCCACCTCGAGGGTAATCGTCTT 276066 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||| || ||||| Sbjct 276065 GCCAGTGAGTGTCTTCACGAAGATTTGCAT 276036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570878692480