Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq49 89.7 5e-13 seq130 82.4 7e-11 >seq49 Length=794425 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | || || ||||| | || || ||| | ||||| | ||||| || ||| | Sbjct 170694 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCA 170635 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| || ||| || || || || || || || || || Sbjct 170634 -GACACAATCGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCA 170576 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || |||||||| | || |||||||| || ||||||| | | | || |||||||| Sbjct 170575 ACAGAGACTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGCACTCTCGCTGATTACAA 170516 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| || ||| | || || || | || ||||||||||| Sbjct 170515 TATCCAGAAAGAGTCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || ||| | ||||| | ||||| || | Sbjct 170922 ATGCAGATCTTTGTTAAAACCCTTACAGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 170863 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || ||| ||| || || || || || || || || ||| Sbjct 170862 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAG 170803 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | || ||||| || || ||||||| ||| | | ||||||||| Sbjct 170802 CAGAGGCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCCGAACTCTTGCAGATTACAAT 170743 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| ||| | || || || | || ||||||||||| Sbjct 170742 ATCCAGAAAGAATCAACCCTGCACTTGGTTCTTAGGTTGAGAGGAGG 170696 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | ||||| | ||||| || | Sbjct 171150 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAAACCATCACCCTAGAAGTTGAGAGCTCG 171091 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || || ||| |||||||| || || || || ||||| Sbjct 171090 GATACCATCGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCTCCGGATCAA 171031 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | ||| ||||| ||||| |||| | | | | ||||||||| Sbjct 171030 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGATTACAAT 170971 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | || || |||||||| Sbjct 170970 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTAGGTTAAGAGGAGG 170924 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || || || |||| || |||| || ||| | Sbjct 171378 ATGCAGATCTTTGTTAAGACTCTTACAGGCAAGACGATAACCCTCGAGGTAGAAAGCTCG 171319 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || |||||||| || || || ||||| ||| Sbjct 171318 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCCGACCAG 171259 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || ||||| | | ||| ||||| ||||| |||| ||| | | ||||||||| Sbjct 171258 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGATGGCCGAACTCTGGCTGATTACAAT 171199 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||| || ||| |||| || || | || |||||||| || Sbjct 171198 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTAGGTTGAGAGGTGG 171152 >seq130 Length=298546 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || ||||| || || || || || | ||||| | ||||| |||| | || || ||| Sbjct 143574 TTCGTAAAGACTTTGACAGGGAAGACCATCACCTTAGAAGTGGAAGACTCGGACACCATC 143515 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || || || |||||||||||||| ||||| || ||||| || || Sbjct 143514 GATAACGTGAAGGCCAAGATCCAGGATAAAGAGGGTATTCCGCCGGACCAGCAGAGGCTG 143455 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | || |||||||| || || |||| | | | | |||||||||| || | || Sbjct 143454 ATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACATTGGGCGATTACAACATCAAGAAG 143395 Query 25364 GAATCCACCATTCATTTAGT 25383 || || |||||||| || || Sbjct 143394 GACTCGACCATTCACTTGGT 143375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445056745013760