Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq69 291 1e-72 seq146 212 9e-49 seq4169 158 2e-32 >seq69 Length=847923 Score = 291 bits (322), Expect = 1e-72 Identities = 409/562 (73%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| | ||| ||||| |||||| || |||||||| || || ||| Sbjct 356457 TGTTCCCGATTCACTACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCATCGTTT 356515 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||| || ||||| ||||| || | | | |||||| |||||| | || | || Sbjct 356516 TGGACGGCGGAGGAAGTCGATCTAT-CTCAGG-ACGGTCGCGACTGGGAGAATCTCAACG 356573 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| |||||| || |||||||| |||||||||||||| || ||||||| || || ||| Sbjct 356574 ACGGCGAGCGGCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCAGACGGAATC 356632 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || || || ||| || || ||| | | ||||| ||| Sbjct 356633 GTTCTGGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCT 356692 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||||||||||||||| ||||| |||||||| || || | ||| ||||| || Sbjct 356693 TTCTACGGGTTCCAGATCGCGATCGAGAACATCCATTCCGAGATGTACAGTCTCCTCCTC 356752 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 ||||| ||| |||||||| |||| ||||| || |||||||| ||||| || | Sbjct 356753 GACACTTACATCAAGGACAACAAGGAGAGAGACCATCTGTTTCGCGCAATCGAAACCATC 356812 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||| ||||| | |||||||||| ||||||| || ||| || ||| Sbjct 356813 CCTTGCGTCGCGAAGAAGGCGCAGTGGGCGATGACGTGGATCGAC--GGA--TCCCAGAC 356868 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 || || ||||| |||||| ||| ||| ||||||| |||||||| ||||| || || | Sbjct 356869 -TTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGTAGCT 356927 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 ||||| | || || ||||| ||||| ||||| |||||||| || | | ||| |||| Sbjct 356928 TCTGCTCGATTTTCTGGCTGAAGAAACGCGGGCTCATGCCGGGAC-TAACCTTCTCCAAC 356986 Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311 || || ||| ||| ||||||| Sbjct 356987 GAGTTGATCTCTCGAGACGAAG 357008 Score = 98.7 bits (108), Expect = 1e-14 Identities = 205/299 (69%), Gaps = 11/299 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 ||| |||||||| || || || || || ||||||| || | | |||| ||| Sbjct 357007 AGGCTTGCACTGCGATTTCGCGTGCCTCATCTACACTCTGTTGAGGACGAAGCTCTCGGA 357066 Query 1456507 CGA---CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 || |||| ||| |||| || ||| |||||||||||||||| |||||||| | Sbjct 357067 GGAGCGCGTG---AAGTCGATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTGTG 357123 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATT 1456622 ||| |||| || ||| | | || |||||| | ||| | ||| ||||||| || Sbjct 357124 CGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCGGGACC--TGATGAGCCAGTATATC 357181 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 |||||| || || || | || | | ||||| || | ||| |||| ||| | || Sbjct 357182 GAATTT-GTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGG-GAAGGTGTACGGTGTGG 357239 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | || ||||| ||||||||||| |||||||| |||| || || ||||| |||||| Sbjct 357240 CGAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGTAAAACAAACTTCTTCGAG 357298 >seq146 Length=264749 Score = 212 bits (234), Expect = 9e-49 Identities = 395/566 (70%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| | |||| |||| || || || Sbjct 121566 TGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCTTCTTTC 121508 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC-ACGGTCCACTGGGTGT---CGCTGAG 1455868 ||||||||||| || ||||| || || || | | |||||| | || | Sbjct 121507 TGGACCGCCGAAGAAGTCGATCTATCTCAGGATTACCG-CGACTGGGAAAAAGCCCTAAA 121449 Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 ||||||||| || || ||| |||||||||||||||| ||| |||||||| || || | Sbjct 121448 CGACGACGAACGGCACTTCGTCAAGCACGTCCTCGC-TTTCTTCGCCGCATCTGACGGAA 121390 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||||| || | ||| || ||| || || ||| | | ||||| ||| Sbjct 121389 TCGTTCTGGAGAATCTATCTTCCCGGTTCATGTCCGATGTTCAAGTCTCCGAGGCTCGTG 121330 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||| ||||||||||| ||||| || || ||||| || | ||| ||||| Sbjct 121329 CCTTCTACGGATTCCAGATCGCGATCGAGAATATTCACTCCGAGATGTACAGTCTCCTTC 121270 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 |||| |||||| |||| ||| |||| || || ||||| ||||| ||||| || Sbjct 121269 TCGATACCTACATCAAAGACAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAACCA 121210 Query 1456109 TGCCGTCGGTGAGGAAAAAGGC-CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 | || | || ||||| ||| ||| ||||||||||| |||||| || || ||| Sbjct 121209 TTCCCTGCGTCGCGAAAATGGCGCGA-TGGGCGATGAAATGGATCGAC-----GGATCTC 121156 Query 1456168 GACACTTTGCCGAGCGGCTCGTCGGCTTT-GC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225 ||| || || || |||| |||||| || ||||||| || ||||| ||||| || Sbjct 121155 AGAGCTTCGCTGAACGTATCGT-GGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGT 121097 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAG 1456285 || |||||| | || || ||||| ||||| || || | ||||| || | || || Sbjct 121096 AGCTTCTGCTCGATTTTCTGGCTGAAGAAACGAGGTTTAATGCCTGGGC-TCACTTTCTC 121038 Query 1456286 CAACGAATTTATCAGTCGCGACGAAG 1456311 ||||||||| ||| || ||||||| Sbjct 121037 CAACGAATTGATCTCGCGAGACGAAG 121012 >seq4169 Length=6310 Score = 158 bits (174), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| || || || |||||| |||| | ||| |||| |||| || Sbjct 3770 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 3823 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| | Sbjct 3824 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 3883 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | || |||||||||||||| || Sbjct 3884 CGTCTCGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 3943 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| ||| ||| |||||| |||||||||||| || ||||||| Sbjct 3944 CGTCTCCTCCTGCCCGGAGAATTGGCCAAGCACGCCGTCTCTGAAGGCACCA 3995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177158413960416