Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq161 547 1e-150 seq352 255 9e-63 seq768 87.8 3e-12 >seq161 Length=278270 Score = 547 bits (606), Expect = 1e-150 Identities = 703/967 (73%), Gaps = 2/967 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 90879 Query 174555 GTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAA 174614 ||| |||||||| ||| | | |||||| ||||| || || || || || |||||| Sbjct 90878 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 90819 Query 174615 CCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 174674 || || |||| || || | || |||||||| || || || ||||| || |||||| Sbjct 90818 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACC 90759 Query 174675 TCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGG 174734 || || || ||| | || || ||||| ||||||||||| || | | || |||||| Sbjct 90758 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 90699 Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794 || |||||||||||||||| ||||| |||| | ||||| | ||||| | Sbjct 90698 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 90639 Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 |||||||| ||||| |||||||| || ||| | |||||| | |||||||| ||| Sbjct 90638 TATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 90579 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| ||| | || || ||| | |||| || | |||||| Sbjct 90578 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 90519 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || | ||||| | || |||||||| || ||||||| ||| | || Sbjct 90518 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 90459 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 90458 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 90399 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 ||||| ||||| | || || ||||||||||| |||| || || | ||| | | Sbjct 90398 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATTAG 90340 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || | ||||||| ||||| ||||||||||| || Sbjct 90339 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 90280 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || ||||| || || || || |||||||||||||| ||| || Sbjct 90279 TTACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 90220 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 ||||||||| || || | || ||||||||||| || ||||| || || ||||| ||||| Sbjct 90219 CAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 90160 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 || || | ||| || ||| ||||| |||||||| ||||||||||| |||||||| || Sbjct 90159 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 90100 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 || | || | ||||| | || | || || ||||| ||| || ||||| | ||| Sbjct 90099 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 90040 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453 ||||| |||||||| |||||||| | ||||| ||||| ||||| ||||| | || || Sbjct 90039 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGC 89980 Query 175454 AGCTGAG 175460 | |||| Sbjct 89979 TGTTGAG 89973 Score = 457 bits (506), Expect = 1e-123 Identities = 706/1008 (70%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 122084 TGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCT 122143 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 122144 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 122203 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| || ||||| | || ||||||| | || ||| || ||| | || Sbjct 122204 AACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAAC 122263 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || ||||||||| || | | | |||||| | | |||| |||||||| Sbjct 122264 CGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCC 122323 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 122324 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGC 122383 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||||||||| || ||||| | || || || ||| | ||||| |||||||| || || Sbjct 122384 TCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGATC 122443 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || || |||||| |||||| || ||||| ||||| Sbjct 122444 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTC 122503 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| || || | || ||||||||||||||| ||||||||||| || |||||||| Sbjct 122504 TGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 122563 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 || || || ||| ||||| | | ||| | || || || || || |||||| ||||||| Sbjct 122564 AGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 122623 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || |||||||||||||| || || |||| || | || || |||| || || ||||| Sbjct 122624 GTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGG 122683 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | |||||| |||||||| ||| ||||||||| || || || ||| ||| || Sbjct 122684 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 122743 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 122744 TAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACA 122803 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| || Sbjct 122804 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 122863 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | | || || ||| | || || ||||| Sbjct 122864 GGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGC 122923 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || || ||| || || | ||||| |||||||| || ||||| |||||||| Sbjct 122924 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTA 122983 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 || || || || ||| | |||||||| | | || |||||||| || ||||| || Sbjct 122984 TACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 123043 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 123044 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 123091 >seq352 Length=147189 Score = 255 bits (282), Expect = 9e-63 Identities = 352/488 (72%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 || || || || | || || ||||||||||| |||| || || | ||| || | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTATAGTTTGATCAG 89208 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || | ||||||| ||||| ||||||||||| || Sbjct 89207 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 89148 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || ||||| || || || || |||||||||| || Sbjct 89147 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTT 89097 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || ||||||||||| || ||||| || || ||||| ||||| Sbjct 89096 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 89037 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 || || | ||| || ||| ||||| |||||||| ||||||||||| |||||||| || Sbjct 89036 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 88977 Query 175334 TGTTATCGACGGACAAG-GTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTG 175392 || | || | |||| || |||| || || ||||| ||| || ||||| | ||| Sbjct 88976 AGTAGTTGATAGTCAAGTGT----TATT-AATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 175393 GTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAG 175452 |||| |||||||| |||||||| | ||||| ||||||||||| |||||| | || | Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTG 88862 Query 175453 CAGCTGAG 175460 | | |||| Sbjct 88861 CTGTTGAG 88854 >seq768 Length=145301 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729 || || ||| | || || ||||| ||||| || || ||| || || | ||||| ||| Sbjct 42072 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAACTTCGTGCAGCGGAA 42131 Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789 ||| || ||| |||||||||| || || || || ||| | |||||||| | | | Sbjct 42132 AATCTAGAATTTAAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGTT 42191 Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCT 176849 |||||||| || ||||| || ||||| || |||||| || ||||||||||| Sbjct 42192 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCTTGAGGAAGTTCTACCA 42251 Query 176850 AGAGGTAACGC 176860 | || ||||| Sbjct 42252 CGTGGAAACGC 42262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729867847955840