Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq161 565 3e-156 seq352 260 2e-64 seq17 91.5 2e-13 >seq161 Length=278270 Score = 565 bits (626), Expect = 3e-156 Identities = 705/966 (73%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 ||||| || || | || ||||| || || ||||||| || || | ||| | ||||| Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 90879 Query 158466 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 158525 | ||| || |||| ||| | |||||||| || || || || || || || |||||| Sbjct 90878 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 90819 Query 158526 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 158585 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 90818 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACC 90759 Query 158586 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 158645 || || |||||| | || || || || ||||||||||| ||||| ||||||| ||| Sbjct 90758 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 90699 Query 158646 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCA 158705 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 90698 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 90639 Query 158706 TATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTA 158765 |||||||| ||||||||||||||| | ||| | |||||||| || ||||| ||| Sbjct 90638 TATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 90579 Query 158766 GCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158825 |||||||| || || || || || || ||||||| ||| | |||| || | |||||| Sbjct 90578 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 90519 Query 158826 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158885 || ||| || |||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 90518 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 90459 Query 158886 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158945 ||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 90458 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 90399 Query 158946 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGT 159005 ||||| || || || || |||||||||||| | || ||||| | || | Sbjct 90398 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 90339 Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 ||||| || |||| || || || | ||||||| ||||| |||||||||||||| Sbjct 90338 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 90279 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 || || || || || || |||||||| || || || |||||||||||||| ||| ||| Sbjct 90278 TACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 90219 Query 159126 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 159185 |||||||||||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 90218 AACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 90159 Query 159186 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 159245 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 90158 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 90099 Query 159246 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGT 159305 | ||||| |||| || ||||| | || || ||||| ||| | | |||||||| Sbjct 90098 GTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 90039 Query 159306 CTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 || |||||||||||||||||||| ||||| || ||||| ||||| || ||||| |||||| Sbjct 90038 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGCT 89979 Query 159366 GCTGAG 159371 | |||| Sbjct 89978 GTTGAG 89973 Score = 482 bits (534), Expect = 3e-131 Identities = 722/1020 (71%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| |||||||| |||||| | || ||||||||| | || ||| || ||| | Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 122261 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 122262 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 122320 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 122321 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGT 122380 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 122381 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCG 122440 Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 ||| || | | || ||||| ||||| || || ||||||||||| |||||||| |||| Sbjct 122441 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 122499 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | || ||||| || || ||| | ||||| || ||||||| || || || |||| Sbjct 122500 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 122559 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || || || || ||| ||||| | | || | ||||| ||||| || ||||| | | Sbjct 122560 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 122619 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| || |||||||||||||| || || |||| || | || ||||| | || || | Sbjct 122620 ACCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTC 122679 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| || || | | ||||||||| || |||||||| || | Sbjct 122680 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 122739 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 122740 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 122799 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 122800 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 122859 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||| | |||| | | ||||| ||| | || || | Sbjct 122860 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 122919 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 |||| || || ||||| || || || | ||||| |||||||||||||||||||| | Sbjct 122920 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTT 122979 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || || || | || ||||| | ||||| ||| | || || || | Sbjct 122980 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 123039 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 123040 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 123099 >seq352 Length=147189 Score = 260 bits (288), Expect = 2e-64 Identities = 352/489 (72%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943 ||||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| | Sbjct 89328 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 89269 Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003 |||| || || || || || |||||||||||| | || |||| | | | || Sbjct 89268 TATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTA-TAGTTTGATC 89210 Query 159004 -GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062 | ||||| || |||| || || || | ||||||| ||||| |||||||||||| Sbjct 89209 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 89150 Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122 || || || || || || || |||||||| || || || |||||||||| | Sbjct 89149 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 89098 Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182 ||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 89097 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 89039 Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242 || || || | || | || ||||| |||||||| || |||||||| |||||||| Sbjct 89038 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 88979 Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCA 159302 || | ||||| |||| | ||| | || || ||||| ||| | | |||||||| Sbjct 88978 TCAGTAGTTGATAGTCAAG----TGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 88923 Query 159303 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362 | |||||||||||||||||||| ||||| || ||||||||||| || || || ||| Sbjct 88922 AACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCT 88863 Query 159363 GCTGCTGAG 159371 |||| |||| Sbjct 88862 GCTGTTGAG 88854 >seq17 Length=826286 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 ||||| || |||||||| || | ||| || || || || ||||||||| |||| Sbjct 68768 GACGCGGCGGAGGAAGCCGGAATCGATCTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCG 68827 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| ||| | || | |||||||| |||||| |||| | || Sbjct 68828 AGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 68887 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 |||||||| ||| ||||||||| |||||||||||| | || ||||| || || || Sbjct 68888 GATGATCAGATCGGCGAAGGATTTGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTT 68947 Query 159735 ACTAT 159739 || || Sbjct 68948 ACCAT 68952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552426860733440